1.0 beta webapp loading error

[JD Wong]

Hi,

I want to create a copy of an existing mine in the beta.  I copied the database over to a new one, created a new .intermine/mine.properties file referencing the new db, and ran tried to build the userprofile db.

The build failed with this message:

BUILD FAILED

/home/jdmswong/intermine_1_0_beta/imbuild/library.xml:78: The following error occurred while executing this line:

/home/jdmswong/intermine_1_0_beta/imbuild/library.xml:109: The following error occurred while executing this line:

/home/jdmswong/intermine_1_0_beta/imbuild/library.xml:257: srcdir "/home/jdmswong/intermine_1_0_beta/intermine/integrate/model/fulldata/src" does not exist!

I've never seen this before, how do I fix this?

The git repository is updated.

Thanks!

-JD

_______________________________________________
dev mailing list
[hidden email]
http://mail.intermine.org/cgi-bin/mailman/listinfo/dev

[JD Wong]

I have something new to add, I also can't run a build from scratch because:

/home/jdmswong/intermine_1_0_beta/imbuild/library.xml:257: srcdir "/home/jdmswong/intermine_1_0_beta/flybasemine-test-1-0/dbmodel/src" does not exist!

Cheers!

-JD

On Mon, Jul 9, 2012 at 12:28 PM, JD Wong <[hidden email]> wrote:

Hi,

I want to create a copy of an existing mine in the beta.  I copied the database over to a new one, created a new .intermine/mine.properties file referencing the new db, and ran tried to build the userprofile db.

The build failed with this message:

BUILD FAILED

/home/jdmswong/intermine_1_0_beta/imbuild/library.xml:78: The following error occurred while executing this line:

/home/jdmswong/intermine_1_0_beta/imbuild/library.xml:109: The following error occurred while executing this line:

/home/jdmswong/intermine_1_0_beta/imbuild/library.xml:257: srcdir "/home/jdmswong/intermine_1_0_beta/intermine/integrate/model/fulldata/src" does not exist!

I've never seen this before, how do I fix this?

The git repository is updated.

Thanks!

-JD

_______________________________________________
dev mailing list
[hidden email]
http://mail.intermine.org/cgi-bin/mailman/listinfo/dev

[JD Wong]

It's not InterMine, it's the Git repository.  These builds work normally using files checked out from svn.

Cheers,

-JD

On Mon, Jul 9, 2012 at 12:34 PM, JD Wong <[hidden email]> wrote:

I have something new to add, I also can't run a build from scratch because:

/home/jdmswong/intermine_1_0_beta/imbuild/library.xml:257: srcdir "/home/jdmswong/intermine_1_0_beta/flybasemine-test-1-0/dbmodel/src" does not exist!

Cheers!

-JD

On Mon, Jul 9, 2012 at 12:28 PM, JD Wong <[hidden email]> wrote:

Hi,

I want to create a copy of an existing mine in the beta.  I copied the database over to a new one, created a new .intermine/mine.properties file referencing the new db, and ran tried to build the userprofile db.

The build failed with this message:

BUILD FAILED

/home/jdmswong/intermine_1_0_beta/imbuild/library.xml:78: The following error occurred while executing this line:

/home/jdmswong/intermine_1_0_beta/imbuild/library.xml:109: The following error occurred while executing this line:

/home/jdmswong/intermine_1_0_beta/imbuild/library.xml:257: srcdir "/home/jdmswong/intermine_1_0_beta/intermine/integrate/model/fulldata/src" does not exist!

I've never seen this before, how do I fix this?

The git repository is updated.

Thanks!

-JD

_______________________________________________
dev mailing list
[hidden email]
http://mail.intermine.org/cgi-bin/mailman/listinfo/dev

[Julie Sullivan]

Hi JD

Yes, I think you figured it out, our migration script to go from subversion to
git didn't copy over empty directories for some reason.

I think we have them all back in git now.

Cheers
Julie

On 09/07/12 17:28, JD Wong wrote:

> Hi,
>
> I want to create a copy of an existing mine in the beta.  I copied the
> database over to a new one, created a new .intermine/mine.properties file
> referencing the new db, and ran tried to build the userprofile db.
>
> The build failed with this message:
> BUILD FAILED
> /home/jdmswong/intermine_1_0_beta/imbuild/library.xml:78: The following
> error occurred while executing this line:
> /home/jdmswong/intermine_1_0_beta/imbuild/library.xml:109: The following
> error occurred while executing this line:
> /home/jdmswong/intermine_1_0_beta/imbuild/library.xml:257: srcdir
> "/home/jdmswong/intermine_1_0_beta/intermine/integrate/model/fulldata/src"
> does not exist!
>
> I've never seen this before, how do I fix this?
> The git repository is updated.
>
> Thanks!
> -JD
>
>
>
>
> _______________________________________________
> dev mailing list
> [hidden email]
> http://mail.intermine.org/cgi-bin/mailman/listinfo/dev

_______________________________________________
dev mailing list
[hidden email]
http://mail.intermine.org/cgi-bin/mailman/listinfo/dev

[Howie Motenko]

Hey Julie & JD,

I had this problem when first moving InterMine stuff to our GitHub account
...  Below are my notes that might be helpful:

Adding empty directories See link:
http://stackoverflow.com/questions/5600621/gitignore-exclude-files-in-direc
tory-but-not-certain-directories

The basic idea is that git only cares about files, so it won't add an
empty directory.  Instead add a .gitignore file to each directory with
this for contents:
        *  #ignore everything in this directory
        !.gitignore   #don't ignore this file



Gratefully,
Howie






On 7/10/12 9:22 AM, "Julie Sullivan" <[hidden email]> wrote:

>Hi JD
>
>Yes, I think you figured it out, our migration script to go from
>subversion to
>git didn't copy over empty directories for some reason.
>
>I think we have them all back in git now.
>
>Cheers
>Julie
>
>On 09/07/12 17:28, JD Wong wrote:
>> Hi,
>>
>> I want to create a copy of an existing mine in the beta.  I copied the
>> database over to a new one, created a new .intermine/mine.properties
>>file
>> referencing the new db, and ran tried to build the userprofile db.
>>
>> The build failed with this message:
>> BUILD FAILED
>> /home/jdmswong/intermine_1_0_beta/imbuild/library.xml:78: The following
>> error occurred while executing this line:
>> /home/jdmswong/intermine_1_0_beta/imbuild/library.xml:109: The following
>> error occurred while executing this line:
>> /home/jdmswong/intermine_1_0_beta/imbuild/library.xml:257: srcdir
>>
>>"/home/jdmswong/intermine_1_0_beta/intermine/integrate/model/fulldata/src
>>"
>> does not exist!
>>
>> I've never seen this before, how do I fix this?
>> The git repository is updated.
>>
>> Thanks!
>> -JD
>>
>>
>>
>>
>> _______________________________________________
>> dev mailing list
>> [hidden email]
>> http://mail.intermine.org/cgi-bin/mailman/listinfo/dev
>
>_______________________________________________
>dev mailing list
>[hidden email]
>http://mail.intermine.org/cgi-bin/mailman/listinfo/dev

The information in this email, including attachments, may be confidential and is intended solely for the addressee(s). If you believe you received this email by mistake, please notify the sender by return email as soon as possible.

_______________________________________________
dev mailing list
[hidden email]
http://mail.intermine.org/cgi-bin/mailman/listinfo/dev