Ability to Select SGE queue?

[Moore, Raymond M.]

I’d like to provide a choice to my users which size Queue they would like to use when they are about to run a tool.

 

  I’m using the SGE configuration through DRMAA on my local install. I’ve only seen the queue set in the wsgi.ini file.

 

Is there a way I can include this choice of SGE queue in my xml?

 

Thanks

 

Raymond Moore

Informatics Specialist, Division of Biomedical Statistics & Informatics | 507-293-0054
Mayo Clinic | 200 First Street SW | Rochester, MN 55905 | www.mayoclinic.org

 

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[Peter Cock]

On Mon, Jul 9, 2012 at 5:34 PM, Moore, Raymond M.
<[hidden email]> wrote:
> I’d like to provide a choice to my users which size Queue they would like to
> use when they are about to run a tool.
>
>   I’m using the SGE configuration through DRMAA on my local install. I’ve
> only seen the queue set in the wsgi.ini file.
>
> Is there a way I can include this choice of SGE queue in my xml?
>
> Thanks

You can set the queue for each tool in the universe.xml file, but
that is all at the moment AFAIK.

More flexible options currently requires modification to Galaxy, e.g.
http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-June/010080.html

Peter

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[Moore, Raymond M.]

Thank you Peter,

That's exactly what I was looking for. I'd really like to implement
the functionality defined by John Chilton.

The ability to select a queue based on the input size is very important
to our group.

Thanks again.

-----Original Message-----
From: Peter Cock [mailto:[hidden email]]
Sent: Monday, July 09, 2012 12:07 PM
To: Moore, Raymond M.
Cc: Galaxy Dev
Subject: Re: [galaxy-dev] Ability to Select SGE queue?

On Mon, Jul 9, 2012 at 5:34 PM, Moore, Raymond M.
<[hidden email]> wrote:
> I'd like to provide a choice to my users which size Queue they would
> like to use when they are about to run a tool.
>
>   I'm using the SGE configuration through DRMAA on my local install.
> I've only seen the queue set in the wsgi.ini file.
>
> Is there a way I can include this choice of SGE queue in my xml?
>
> Thanks

You can set the queue for each tool in the universe.xml file, but that
is all at the moment AFAIK.

More flexible options currently requires modification to Galaxy, e.g.
http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-June/010080.html

Peter

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On Jul 9, 2012, at 4:55 PM, Moore, Raymond M. wrote:

> Thank you Peter,
>
> That's exactly what I was looking for. I'd really like to implement
> the functionality defined by John Chilton.
>
> The ability to select a queue based on the input size is very important
> to our group.
>
> Thanks again.
>
> -----Original Message-----
> From: Peter Cock [mailto:[hidden email]]
> Sent: Monday, July 09, 2012 12:07 PM
> To: Moore, Raymond M.
> Cc: Galaxy Dev
> Subject: Re: [galaxy-dev] Ability to Select SGE queue?
>
> On Mon, Jul 9, 2012 at 5:34 PM, Moore, Raymond M.
> <[hidden email]> wrote:
>> I'd like to provide a choice to my users which size Queue they would
>> like to use when they are about to run a tool.
>>
>>  I'm using the SGE configuration through DRMAA on my local install.
>> I've only seen the queue set in the wsgi.ini file.
>>
>> Is there a way I can include this choice of SGE queue in my xml?
>>
>> Thanks
>
> You can set the queue for each tool in the universe.xml file, but that
> is all at the moment AFAIK.
>
> More flexible options currently requires modification to Galaxy, e.g.
> http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-June/010080.html

These changes have been accepted, the dynamic runner should be usable now (and part of the next -dist which we are hoping to have out next week, before the GCC).

--nate

>
> Peter
>
> ___________________________________________________________
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> in your mail client.  To manage your subscriptions to this
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>
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