Apollo 2.3.1 released

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Apollo 2.3.1 released


Apollo 2.3.1 is officially released.  It is available via download (https://github.com/GMOD/Apollo/releases/tag/2.3.1), https://github.com/GMOD/Apollo/, docker https://github.com/GMOD/docker-apollo, and as a community AMI via Amazon Web Services (only in N. Virginia, but let me know if you need it moved). 


Apollo Team

Many bug fixes and some minor enhancements. Many thanks to the community for reporting, testing, and fixing these issues.


To test in Docker:

docker run -it -p 8888:8080 quay.io/gmod/docker-apollo:2.3.0 -v /path/to/jbrowse/directories:/data/
Please review the documentation pages for more details: http://genomearchitect.readthedocs.io/en/stable/

Note: You can find a guide upgrading existing Apollo installations here:

Please open a GitHub issue if you find any problems: https://github.com/GMOD/Apollo/issues/

Active mailing list ([hidden email]) and archive.

Bug Fixes

  • Fixed issue when dragging features to resize was not providing an indicator box 1988
  • Fixed issue when sequence alterations were not rendering the full height of the sequence track 2049
  • Making organisms obsolete should remove associated permissions 2043
  • User-created features taken from split reads should create features with introns 2036
  • Should indicate split reads properly in evidence 20342054
  • Temporary files not removed during export of GFF3 or other file types 1966
  • Fixed issue where you could not alter an isoform after deleting a gene name 1961
  • Fixed some minor issues associated with sequence alterations 1497
  • Multiple owners tagged on GFF3 export 29
  • Setting gene description puts UcA into a bad state 2056
  • Fixes plugin inclusion error by reverting prior fix 2055

Minor Features

  • Allowed duplication of organism from the Organism Panel 1968
  • Allows making an organism obsolete 1967
  • Create a filter and flag for inactive users 1937
  • Allowed deletion of feature from the Sequence and Annotator Panels 2040
  • Allow export of orig_id as an optional attribute 2002

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