Apollo ORF versus predicted ORF

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Apollo ORF versus predicted ORF

Hilgert, Uwe
Apollo does not display CDS information provided by gene predictors but
calculates the longest ORF, instead. CDS data provided by gene
predictors are ignored. I would think that Apollo should display
predicted CDS, especially since contemporary gene predictors are often
being trained to deal with specific genomes and might do a better job
than just invoking the longest ORF. Users could then still have the
option to invoke Apollo's 'Calculate longest ORF' utility if they'd wish
to.

Thoughts, anybody?

Uwe

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Uwe Hilgert, Ph.D.
Dolan DNA Learning Center
Cold Spring Harbor Laboratory
 
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