BigWix XYPlot: Y axis scale values truncated

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BigWix XYPlot: Y axis scale values truncated

Keiran Raine
Hi,

Does any one know if it is possible to expand the width of the Y axis  
area so that larger values can be displayed?  We have found that there  
are regions in wholegenome sequencing where depth can jump up into the  
tens of thousands even though average coverage is ~30x

Regards,

Keiran Raine
Senior Computer Biologist
The Cancer Genome Project
Ext: 7703
[hidden email]







--
 The Wellcome Trust Sanger Institute is operated by Genome Research
 Limited, a charity registered in England with number 1021457 and a
 company registered in England with number 2742969, whose registered
 office is 215 Euston Road, London, NW1 2BE.

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Re: BigWix XYPlot: Y axis scale values truncated

Weeks, Nathan
Re: [Gmod-gbrowse] BigWix XYPlot: Y axis scale values truncated

Keiran,

Try setting "pad_left" and "pad_right".

--
Nathan Weeks
USDA-ARS
SoyBase http://soybase.org

----------------------------------------------------------------------

Message: 1
Date: Thu, 31 Mar 2011 09:08:12 +0100
From: Keiran Raine <[hidden email]>
Subject: [Gmod-gbrowse] BigWix XYPlot: Y axis scale values truncated
To: gbrowse List <[hidden email]>
Message-ID: <[hidden email]>
Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes

Hi,

Does any one know if it is possible to expand the width of the Y axis 
area so that larger values can be displayed?  We have found that there 
are regions in wholegenome sequencing where depth can jump up into the 
tens of thousands even though average coverage is ~30x

Regards,

Keiran Raine
Senior Computer Biologist
The Cancer Genome Project
Ext: 7703
[hidden email]







--
 The Wellcome Trust Sanger Institute is operated by Genome Research
 Limited, a charity registered in England with number 1021457 and a
 company registered in England with number 2742969, whose registered
 office is 215 Euston Road, London, NW1 2BE.



------------------------------



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Re: BigWix XYPlot: Y axis scale values truncated

Keiran Raine
Hi Nathan,

Just discovered that this is not really an issue when you switch to GBrowse 2.26 and turn on details_multiplier as you then get the scale periodically along the image.

Thanks,

Keiran Raine
Senior Computer Biologist
The Cancer Genome Project
Ext: 7703





On 31 Mar 2011, at 22:11, Weeks, Nathan wrote:

Keiran,

Try setting "pad_left" and "pad_right".

--
Nathan Weeks
USDA-ARS
SoyBase http://soybase.org

----------------------------------------------------------------------

Message: 1
Date: Thu, 31 Mar 2011 09:08:12 +0100
From: Keiran Raine <[hidden email]>
Subject: [Gmod-gbrowse] BigWix XYPlot: Y axis scale values truncated
To: gbrowse List <[hidden email]>
Message-ID: <[hidden email]>
Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes

Hi,

Does any one know if it is possible to expand the width of the Y axis 
area so that larger values can be displayed?  We have found that there 
are regions in wholegenome sequencing where depth can jump up into the 
tens of thousands even though average coverage is ~30x

Regards,

Keiran Raine
Senior Computer Biologist
The Cancer Genome Project
Ext: 7703
[hidden email]







--
 The Wellcome Trust Sanger Institute is operated by Genome Research
 Limited, a charity registered in England with number 1021457 and a
 company registered in England with number 2742969, whose registered
 office is 215 Euston Road, London, NW1 2BE.



------------------------------




-- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a compa ny registered in England with number 2742969, whose registered office is 2 15 Euston Road, London, NW1 2BE.

------------------------------------------------------------------------------
Create and publish websites with WebMatrix
Use the most popular FREE web apps or write code yourself;
WebMatrix provides all the features you need to develop and
publish your website. http://p.sf.net/sfu/ms-webmatrix-sf

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