[BioMart Users] Error has occurred

[nqueralt]

Dear all,

 

I linked Ensembl mart with a local virtual mart, being Ensembl configuration the one i am editing and our local virtual mart config the source for creating the link to the Ensembl configuration and ‘Ensembl Gene ID’ the attribute chosen for the link. I’m detecting that when I query this configuration the message “Error has occurred” comes up, but only when a specific attribute from our local mart is set as attribute. This attribute is the same used for creating the report based on the previously existing local virtual mart configuration. How could i trace this error to find out why is happening?

 

For more information, I tried to overcome this error doing the reverse link: editing the local virtual mart configuration and linking it to Ensembl mart config by means of ‘Ensembl Gene ID’ attribute that is common in the two marts. But in this case the error emerges when ‘Ensembl Gene ID’ from Ensembl mart is set as attribute. Moreover, once the link is set, when i edited the virtual mart configuration moving all the folders from Ensembl config to virtual mart config, not all the folders are available to be copied. Why is this happening?

 

Many thanks in advance.

 

Regards,

Núria

 

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[Arek Kasprzyk]

Hi Nuria,
I think we need Yong's (our MConfigurator expert) advice because this does not seem to be a very informative error message. Yong: would you be able to point Nuria in the right direction if she sent you the error log?


a

On Tue, Nov 8, 2011 at 6:58 AM, <[hidden email]> wrote:

Dear all,

 

I linked Ensembl mart with a local virtual mart, being Ensembl configuration the one i am editing and our local virtual mart config the source for creating the link to the Ensembl configuration and ‘Ensembl Gene ID’ the attribute chosen for the link. I’m detecting that when I query this configuration the message “Error has occurred” comes up, but only when a specific attribute from our local mart is set as attribute. This attribute is the same used for creating the report based on the previously existing local virtual mart configuration. How could i trace this error to find out why is happening?

 

For more information, I tried to overcome this error doing the reverse link: editing the local virtual mart configuration and linking it to Ensembl mart config by means of ‘Ensembl Gene ID’ attribute that is common in the two marts. But in this case the error emerges when ‘Ensembl Gene ID’ from Ensembl mart is set as attribute. Moreover, once the link is set, when i edited the virtual mart configuration moving all the folders from Ensembl config to virtual mart config, not all the folders are available to be copied. Why is this happening?

 

Many thanks in advance.

 

Regards,

Núria

 

_______________________________________________
Users mailing list
[hidden email]
https://lists.biomart.org/mailman/listinfo/users

_______________________________________________
Users mailing list
[hidden email]
https://lists.biomart.org/mailman/listinfo/users

[Yong Liang]

I think Junjun may be the best person to help on this issue. 

From: Arek Kasprzyk <[hidden email]>
Date: Tue, 8 Nov 2011 11:53:33 -0500
To: "[hidden email]" <[hidden email]>
Cc: "[hidden email]" <[hidden email]>
Subject: Re: [BioMart Users] Error has occurred

Hi Nuria,
I think we need Yong's (our MConfigurator expert) advice because this does not seem to be a very informative error message. Yong: would you be able to point Nuria in the right direction if she sent you the error log?


a

On Tue, Nov 8, 2011 at 6:58 AM, <[hidden email]> wrote:

Dear all,

 

I linked Ensembl mart with a local virtual mart, being Ensembl configuration the one i am editing and our local virtual mart config the source for creating the link to the Ensembl configuration and ‘Ensembl Gene ID’ the attribute chosen for the link. I’m detecting that when I query this configuration the message “Error has occurred” comes up, but only when a specific attribute from our local mart is set as attribute. This attribute is the same used for creating the report based on the previously existing local virtual mart configuration. How could i trace this error to find out why is happening?

 

For more information, I tried to overcome this error doing the reverse link: editing the local virtual mart configuration and linking it to Ensembl mart config by means of ‘Ensembl Gene ID’ attribute that is common in the two marts. But in this case the error emerges when ‘Ensembl Gene ID’ from Ensembl mart is set as attribute. Moreover, once the link is set, when i edited the virtual mart configuration moving all the foldersfrom Ensembl config to virtual mart config, not all the folders are available to be copied. Why is this happening?

 

Many thanks in advance.

 

Regards,

Núria

 

_______________________________________________
Users mailing list
[hidden email]
https://lists.biomart.org/mailman/listinfo/users

_______________________________________________
Users mailing list
[hidden email]
https://lists.biomart.org/mailman/listinfo/users

[Junjun Zhang]

Hi Núria,

We would need reproduce the problems here, is it possible to send me (off the list) the registry file so we can test it out?

Best regards,

Junjun

From: Yong Liang <[hidden email]>
Date: Tue, 8 Nov 2011 12:31:48 -0500
To: Arek Kasprzyk <[hidden email]>, "[hidden email]" <[hidden email]>
Cc: "[hidden email]" <[hidden email]>
Subject: Re: [BioMart Users] Error has occurred

I think Junjun may be the best person to help on this issue. 

From: Arek Kasprzyk <[hidden email]>
Date: Tue, 8 Nov 2011 11:53:33 -0500
To: "[hidden email]" <[hidden email]>
Cc: "[hidden email]" <[hidden email]>
Subject: Re: [BioMart Users] Error has occurred

Hi Nuria,
I think we need Yong's (our MConfigurator expert) advice because this does not seem to be a very informative error message. Yong: would you be able to point Nuria in the right direction if she sent you the error log?


a

On Tue, Nov 8, 2011 at 6:58 AM, <[hidden email]> wrote:

Dear all,

 

I linked Ensembl mart with a local virtual mart, being Ensembl configuration the one i am editing and our local virtual mart config the source for creating the link to the Ensembl configuration and ‘Ensembl Gene ID’ the attribute chosen for the link. I’m detecting that when I query this configuration the message “Error has occurred” comes up, but only when a specific attribute from our local mart is set as attribute. This attribute is the same used for creating the report based on the previously existing local virtual mart configuration. How could i trace this error to find out why is happening?

 

For more information, I tried to overcome this error doing the reverse link: editing the local virtual mart configuration and linking it to Ensembl mart config by means of ‘Ensembl Gene ID’ attribute that is common in the two marts. But in this case the error emerges when ‘Ensembl Gene ID’ from Ensembl mart is set as attribute. Moreover, once the link is set, when i edited the virtual mart configuration moving all the foldersfrom Ensembl config to virtual mart config, not all the folders are available to be copied. Why is this happening?

 

Many thanks in advance.

 

Regards,

Núria

 

_______________________________________________
Users mailing list
[hidden email]
https://lists.biomart.org/mailman/listinfo/users

_______________________________________________
Users mailing list
[hidden email]
https://lists.biomart.org/mailman/listinfo/users