[BioMart Users] Error importing marts

[anu jagtap]

Hi,

I have created a mart using marbuilder and marteditor. Mart is in MySQL database and I have provided the registry details using martDBlocation.

I am able to see the mart in drop down list in Martview But when I try to query the mart using Martview, it errors out with below message

ERROR: requested template missing

Can you please help me resolve this error. 

Thanks,

Anu

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[Syed Haider-2]

Hi Anu,

i wonder if you have tried using the ensembl martdb params to see if
that works for you ?

some pointers are available in this thread too:

http://comments.gmane.org/gmane.science.biology.biomart.general/1136

Best,
Syed

On 04/07/2012 19:14, anu jagtap wrote:

>
>         Hi,
>
>
> I have created a mart using marbuilder and marteditor. Mart is in MySQL
> database and I have provided the registry details using martDBlocation.
> I am able to see the mart in drop down list in Martview But when I try
> to query the mart using Martview, it errors out with below message
>
>
>         ERROR: requested template missing
>
>
> Can you please help me resolve this error.
>
> Thanks,
> Anu
>
>
>
> _______________________________________________
> Users mailing list
> [hidden email]
> https://lists.biomart.org/mailman/listinfo/users
>

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[anu jagtap]

Syed,

Can you please provide me the EnsembleMartDB configuration xml?

I tried following 2 martURLlocations

<MartURLLocation

                name         = "msd"

                displayName  = "My BioMart Database"

                host         = "www.biomart.org"

                port         = "80"

                visible      = "1"

                default      = ""

                includeDatasets = "msd"

                martUser     = ""

/>

<MartURLLocation 

database="unimart" 

default="" 

displayName="UNIPROT (EBI UK)" 

host="www.ebi.ac.uk" 

includeDatasets="" 

martUser="" 

name="unimart" 

path="/uniprot/biomart/martservice" 

port="80" 

redirect="1" 

serverVirtualSchema="default" 

visible="1" 

/>

I am able to query MSD mart but not able to query UNIPROT. I get same error  ERROR: requested template missing

Thanks,

Anu

On Thu, Jul 5, 2012 at 2:10 PM, Syed Haider <[hidden email]> wrote:

Hi Anu,

i wonder if you have tried using the ensembl martdb params to see if that works for you ?

some pointers are available in this thread too:

http://comments.gmane.org/gmane.science.biology.biomart.general/1136

Best,
Syed

On 04/07/2012 19:14, anu jagtap wrote:

        Hi,


I have created a mart using marbuilder and marteditor. Mart is in MySQL
database and I have provided the registry details using martDBlocation.
I am able to see the mart in drop down list in Martview But when I try
to query the mart using Martview, it errors out with below message


        ERROR: requested template missing


Can you please help me resolve this error.

Thanks,
Anu

_______________________________________________
Users mailing list
[hidden email]
https://lists.biomart.org/mailman/listinfo/users

_______________________________________________
Users mailing list
[hidden email]
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