Bowtie with FASTA and Illumina FASTQ

classic Classic list List threaded Threaded
1 message Options
Reply | Threaded
Open this post in threaded view
|

Bowtie with FASTA and Illumina FASTQ

Assaf Gordon-2
Hi all,

Here's a patch that allow the Bowtie wrapper in Galaxy to use FASTA files and Illumina FASTQ files, without grooming.
The input type is automatically detected (based on the dataset's type).

The patch is also available here:
 http://cancan.cshl.edu/labmembers/gordon/files/galaxy_bowtie_wrapper_fasta_input.patch

To import it, run:
 hg import http://cancan.cshl.edu/labmembers/gordon/files/galaxy_bowtie_wrapper_fasta_input.patch

Comments are welcomed,
 -gordon

_______________________________________________
galaxy-dev mailing list
[hidden email]
http://lists.bx.psu.edu/listinfo/galaxy-dev

galaxy_bowtie_wrapper_fasta_input.patch (6K) Download Attachment