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Chado

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Support and development list for the Chado database schema in the Generic Model Organism Database (GMOD) project.
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Topics (479)
Replies Last Post Views
Fwd: gff3 file loading by Asma Riyaz
11
by Scott Cain
Re: [Gmod-gbrowse] Re-load gene ontologies into Chado by Scott Cain
7
by Scott Cain
analysis_id datatype mismatch by Karl O. Pinc
0
by Karl O. Pinc
How to model split genes by Chris Childers
8
by Chris Childers
GMODTools Config files and dumping gff from chado by Sofia Robb
0
by Sofia Robb
Chado Group Module RC2 by Mara Kim-2
1
by Siddhartha Basu
An alteranate high-throughput sequencing chado representation by Karl O. Pinc
0
by Karl O. Pinc
natural diversity nd_reagent multiple schemas common and specific data postgres by Matija
8
by Karl O. Pinc
bug in gff bulk loader (+ fix?) by adf_ncgr
0
by adf_ncgr
How to access residues of a feature without doing direct SQL? by Michael Dondrup-3
1
by Scott Cain
Unable to load GO into Chado, GO bug or GMOD tools bug or .... by George Hartzell
5
by George Hartzell
proposal for changes to the phenotype module by Naama Menda
5
by Naama Menda
Avoiding the empty string in text by Karl O. Pinc
6
by Karl O. Pinc
Looking for someone to lead a Chado/GMOD training day near San Francisco, CA. by George Hartzell
0
by George Hartzell
nd_experiment_stock uniqueness constraints by Karl O. Pinc
1
by Scott Cain
XSD/DTD for Chado-XML by David M. Goodstein
2
by David M. Goodstein
Changing type of seqlen column in feature table to 'bigint' by Mara Kim-2
4
by Karl O. Pinc
Extending the analysisfeature table by Karl O. Pinc
3
by Scott Cain
Database versioning by Karl O. Pinc
2
by Karl O. Pinc
analysisfeature and it's relationship to feature by Karl O. Pinc
0
by Karl O. Pinc
Ontologies v.s. feature synonyms by Karl O. Pinc
4
by Karl O. Pinc
group_on = display_name causes exception in Bio::DB::Das::Chado::Segment by Michael Dondrup-3
0
by Michael Dondrup-3
Unable to find a 'part_of' term in the relationship ontology by Seth_m55
12
by Seth_m55
Loading ontologies to a non-public schema by Scott Cain
3
by Stephen Ficklin-2
Fwd: [rt.cpan.org #95209] DBIx::DBSchema::DBD::Pg hardcodes the "public" schema [bug-DBIx-DBSchema@rt.cpan.org] by Karl O. Pinc
0
by Karl O. Pinc
Re: [Bioperl-l] Bio::GMOD::DB::Adapter is broken regards the public schema by Fields, Christopher ...
4
by Karl O. Pinc
Chado upgrade schedule? by Stephen Ficklin-2
0
by Stephen Ficklin-2
Expanding the 'organism' table by Mara Kim-2
0
by Mara Kim-2
Re: [Gmod-tripal] Error with gmod_bulk loader by Scott Cain
0
by Scott Cain
Release of Tripal v2.0a by Stephen Ficklin-2
12
by Kucheran, Lacey Sand...
cv relationships by Sanjuro Jogdeo
25
by Bob MacCallum
Syntax hilighting on the wiki -- bad by Karl O. Pinc
0
by Karl O. Pinc
GMOD Online Training 2014 by girlwithglasses
0
by girlwithglasses
Questions about phenotype.assay_id, feature_genotype table and dbxref by Hugo-pH
0
by Hugo-pH
A report on installing chado by Karl O. Pinc
3
by Siddhartha Basu
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