Community call Thursday the 5 of November

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Community call Thursday the 5 of November

Daniela Butano-2
Dear all,

We have a community call next Thursday, the 5th of November.

What time? The call will be at 17:00 UK time. I think that every country
that turns clocks back will have done it before our call on Thursday.
Let me know if that is not the case and we will try to rearrange the
time.

We'll discuss about the model changes related to Espression Data and
Kevin will demo some of the newer features implemented in BlueGenes.
The call will be recorded for those of you who can't make it, and the
notes posted online.

I will send you the Agenda and joining link before the call.

Have a nice weekend!
Daniela
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Re: Community call Thursday the 5 of November

Sam Hokin-3
For your viewing pleasure, here's the expression data model that I'm currently using on the LIS mines, which is based on the GitHub
issue comments (https://github.com/intermine/intermine/issues/2229):

<class name="ExpressionSource" is-interface="true">
         <attribute name="sra" type="java.lang.String"/>
         <attribute name="identifier" type="java.lang.String"/>
         <attribute name="description" type="java.lang.String"/>
         <attribute name="geoSeries" type="java.lang.String"/>
         <attribute name="origin" type="java.lang.String"/>
         <attribute name="shortName" type="java.lang.String"/>
         <reference name="publication" referenced-type="Publication"/>
         <reference name="bioProject" referenced-type="BioProject"/>
         <reference name="dataSet" referenced-type="DataSet"/>
         <collection name="samples" referenced-type="ExpressionSample" reverse-reference="source"/>
</class>

<class name="ExpressionSample" extends="BioEntity" is-interface="true">
         <attribute name="num" type="java.lang.Integer"/>
         <attribute name="description" type="java.lang.String"/>
         <attribute name="bioSample" type="java.lang.String"/>
         <reference name="source" referenced-type="ExpressionSource" reverse-reference="samples"/>
</class>

<class name="ExpressionValue" extends="java.lang.Object" is-interface="false">
         <attribute name="value" type="java.lang.Double"/>
         <attribute name="unit" type="java.lang.String"/>
         <reference name="sample" referenced-type="ExpressionSample"/>
         <reference name="feature" referenced-type="SequenceFeature"/>
</class>


On 10/30/20 9:16 AM, [hidden email] wrote:

> Dear all,
>
> We have a community call next Thursday, the 5th of November.
>
> What time? The call will be at 17:00 UK time. I think that every country that turns clocks back will have done it before our call
> on Thursday. Let me know if that is not the case and we will try to rearrange the time.
>
> We'll discuss about the model changes related to Espression Data and Kevin will demo some of the newer features implemented in
> BlueGenes. The call will be recorded for those of you who can't make it, and the notes posted online.
>
> I will send you the Agenda and joining link before the call.
>
> Have a nice weekend! Daniela _______________________________________________
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[hidden email]
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Re: Community call Thursday the 5 of November

Daniela Butano-2
Thanks Sam!
Daniela

> For your viewing pleasure, here's the expression data model that I'm
> currently using on the LIS mines, which is based on the GitHub issue
> comments (https://github.com/intermine/intermine/issues/2229):
>
> <class name="ExpressionSource" is-interface="true">
>         <attribute name="sra" type="java.lang.String"/>
>         <attribute name="identifier" type="java.lang.String"/>
>         <attribute name="description" type="java.lang.String"/>
>         <attribute name="geoSeries" type="java.lang.String"/>
>         <attribute name="origin" type="java.lang.String"/>
>         <attribute name="shortName" type="java.lang.String"/>
>         <reference name="publication" referenced-type="Publication"/>
>         <reference name="bioProject" referenced-type="BioProject"/>
>         <reference name="dataSet" referenced-type="DataSet"/>
>         <collection name="samples" referenced-type="ExpressionSample"
> reverse-reference="source"/>
> </class>
>
> <class name="ExpressionSample" extends="BioEntity" is-interface="true">
>         <attribute name="num" type="java.lang.Integer"/>
>         <attribute name="description" type="java.lang.String"/>
>         <attribute name="bioSample" type="java.lang.String"/>
>         <reference name="source" referenced-type="ExpressionSource"
> reverse-reference="samples"/>
> </class>
>
> <class name="ExpressionValue" extends="java.lang.Object"
> is-interface="false">
>         <attribute name="value" type="java.lang.Double"/>
>         <attribute name="unit" type="java.lang.String"/>
>         <reference name="sample" referenced-type="ExpressionSample"/>
>         <reference name="feature" referenced-type="SequenceFeature"/>
> </class>
>
>
> On 10/30/20 9:16 AM, [hidden email] wrote:
>> Dear all,
>>
>> We have a community call next Thursday, the 5th of November.
>>
>> What time? The call will be at 17:00 UK time. I think that every
>> country that turns clocks back will have done it before our call
>> on Thursday. Let me know if that is not the case and we will try to
>> rearrange the time.
>>
>> We'll discuss about the model changes related to Espression Data and
>> Kevin will demo some of the newer features implemented in BlueGenes.
>> The call will be recorded for those of you who can't make it, and the
>> notes posted online.
>>
>> I will send you the Agenda and joining link before the call.
>>
>> Have a nice weekend! Daniela
>> _______________________________________________

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Re: Community call Thursday the 5 of November - AGENDA

Daniela Butano-2
Dear all,
here the agenda and joining link for the tomorrow's community call:
https://hackmd.io/@danielabutano/HyYf5_pOP

Best wishes,
Daniela

> Thanks Sam!
> Daniela
>> For your viewing pleasure, here's the expression data model that I'm
>> currently using on the LIS mines, which is based on the GitHub issue
>> comments (https://github.com/intermine/intermine/issues/2229):
>>
>> <class name="ExpressionSource" is-interface="true">
>>         <attribute name="sra" type="java.lang.String"/>
>>         <attribute name="identifier" type="java.lang.String"/>
>>         <attribute name="description" type="java.lang.String"/>
>>         <attribute name="geoSeries" type="java.lang.String"/>
>>         <attribute name="origin" type="java.lang.String"/>
>>         <attribute name="shortName" type="java.lang.String"/>
>>         <reference name="publication" referenced-type="Publication"/>
>>         <reference name="bioProject" referenced-type="BioProject"/>
>>         <reference name="dataSet" referenced-type="DataSet"/>
>>         <collection name="samples" referenced-type="ExpressionSample"
>> reverse-reference="source"/>
>> </class>
>>
>> <class name="ExpressionSample" extends="BioEntity"
>> is-interface="true">
>>         <attribute name="num" type="java.lang.Integer"/>
>>         <attribute name="description" type="java.lang.String"/>
>>         <attribute name="bioSample" type="java.lang.String"/>
>>         <reference name="source" referenced-type="ExpressionSource"
>> reverse-reference="samples"/>
>> </class>
>>
>> <class name="ExpressionValue" extends="java.lang.Object"
>> is-interface="false">
>>         <attribute name="value" type="java.lang.Double"/>
>>         <attribute name="unit" type="java.lang.String"/>
>>         <reference name="sample" referenced-type="ExpressionSample"/>
>>         <reference name="feature" referenced-type="SequenceFeature"/>
>> </class>
>>
>>
>> On 10/30/20 9:16 AM, [hidden email] wrote:
>>> Dear all,
>>>
>>> We have a community call next Thursday, the 5th of November.
>>>
>>> What time? The call will be at 17:00 UK time. I think that every
>>> country that turns clocks back will have done it before our call
>>> on Thursday. Let me know if that is not the case and we will try to
>>> rearrange the time.
>>>
>>> We'll discuss about the model changes related to Espression Data and
>>> Kevin will demo some of the newer features implemented in BlueGenes.
>>> The call will be recorded for those of you who can't make it, and the
>>> notes posted online.
>>>
>>> I will send you the Agenda and joining link before the call.
>>>
>>> Have a nice weekend! Daniela
>>> _______________________________________________
>
> _______________________________________________
> dev mailing list
> [hidden email]
> https://lists.intermine.org/mailman/listinfo/dev

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Re: Community call Thursday the 5 of November - AGENDA

joe carlson
Hi,

Sorry I had to leave this call early (our group meeting conflicts at this time, unfortunately.) Is there a link for the recording somewhere?

Joe

> On Nov 4, 2020, at 6:08 AM, [hidden email] wrote:
>
> Dear all,
> here the agenda and joining link for the tomorrow's community call: https://hackmd.io/@danielabutano/HyYf5_pOP
>
> Best wishes,
> Daniela
>
>> Thanks Sam!
>> Daniela
>>> For your viewing pleasure, here's the expression data model that I'm
>>> currently using on the LIS mines, which is based on the GitHub issue
>>> comments (https://github.com/intermine/intermine/issues/2229):
>>> <class name="ExpressionSource" is-interface="true">
>>>        <attribute name="sra" type="java.lang.String"/>
>>>        <attribute name="identifier" type="java.lang.String"/>
>>>        <attribute name="description" type="java.lang.String"/>
>>>        <attribute name="geoSeries" type="java.lang.String"/>
>>>        <attribute name="origin" type="java.lang.String"/>
>>>        <attribute name="shortName" type="java.lang.String"/>
>>>        <reference name="publication" referenced-type="Publication"/>
>>>        <reference name="bioProject" referenced-type="BioProject"/>
>>>        <reference name="dataSet" referenced-type="DataSet"/>
>>>        <collection name="samples" referenced-type="ExpressionSample"
>>> reverse-reference="source"/>
>>> </class>
>>> <class name="ExpressionSample" extends="BioEntity" is-interface="true">
>>>        <attribute name="num" type="java.lang.Integer"/>
>>>        <attribute name="description" type="java.lang.String"/>
>>>        <attribute name="bioSample" type="java.lang.String"/>
>>>        <reference name="source" referenced-type="ExpressionSource"
>>> reverse-reference="samples"/>
>>> </class>
>>> <class name="ExpressionValue" extends="java.lang.Object" is-interface="false">
>>>        <attribute name="value" type="java.lang.Double"/>
>>>        <attribute name="unit" type="java.lang.String"/>
>>>        <reference name="sample" referenced-type="ExpressionSample"/>
>>>        <reference name="feature" referenced-type="SequenceFeature"/>
>>> </class>
>>> On 10/30/20 9:16 AM, [hidden email] wrote:
>>>> Dear all,
>>>> We have a community call next Thursday, the 5th of November.
>>>> What time? The call will be at 17:00 UK time. I think that every country that turns clocks back will have done it before our call
>>>> on Thursday. Let me know if that is not the case and we will try to rearrange the time.
>>>> We'll discuss about the model changes related to Espression Data and Kevin will demo some of the newer features implemented in BlueGenes. The call will be recorded for those of you who can't make it, and the notes posted online.
>>>> I will send you the Agenda and joining link before the call.
>>>> Have a nice weekend! Daniela _______________________________________________
>> _______________________________________________
>> dev mailing list
>> [hidden email]
>> https://lists.intermine.org/mailman/listinfo/dev
>
> _______________________________________________
> dev mailing list
> [hidden email]
> https://lists.intermine.org/mailman/listinfo/dev

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Re: Community call Thursday the 5 of November - AGENDA

Rachel Lyne-2
Hi Joe,

Apologies for the delay. It is now available on the InterMine YouTube
channel,

Rachel.


On 2020-11-12 19:22, Joe Carlson wrote:

> Hi,
>
> Sorry I had to leave this call early (our group meeting conflicts at
> this time, unfortunately.) Is there a link for the recording
> somewhere?
>
> Joe
>
>> On Nov 4, 2020, at 6:08 AM, [hidden email] wrote:
>>
>> Dear all,
>> here the agenda and joining link for the tomorrow's community call:
>> https://hackmd.io/@danielabutano/HyYf5_pOP
>>
>> Best wishes,
>> Daniela
>>
>>> Thanks Sam!
>>> Daniela
>>>> For your viewing pleasure, here's the expression data model that I'm
>>>> currently using on the LIS mines, which is based on the GitHub issue
>>>> comments (https://github.com/intermine/intermine/issues/2229):
>>>> <class name="ExpressionSource" is-interface="true">
>>>>        <attribute name="sra" type="java.lang.String"/>
>>>>        <attribute name="identifier" type="java.lang.String"/>
>>>>        <attribute name="description" type="java.lang.String"/>
>>>>        <attribute name="geoSeries" type="java.lang.String"/>
>>>>        <attribute name="origin" type="java.lang.String"/>
>>>>        <attribute name="shortName" type="java.lang.String"/>
>>>>        <reference name="publication" referenced-type="Publication"/>
>>>>        <reference name="bioProject" referenced-type="BioProject"/>
>>>>        <reference name="dataSet" referenced-type="DataSet"/>
>>>>        <collection name="samples" referenced-type="ExpressionSample"
>>>> reverse-reference="source"/>
>>>> </class>
>>>> <class name="ExpressionSample" extends="BioEntity"
>>>> is-interface="true">
>>>>        <attribute name="num" type="java.lang.Integer"/>
>>>>        <attribute name="description" type="java.lang.String"/>
>>>>        <attribute name="bioSample" type="java.lang.String"/>
>>>>        <reference name="source" referenced-type="ExpressionSource"
>>>> reverse-reference="samples"/>
>>>> </class>
>>>> <class name="ExpressionValue" extends="java.lang.Object"
>>>> is-interface="false">
>>>>        <attribute name="value" type="java.lang.Double"/>
>>>>        <attribute name="unit" type="java.lang.String"/>
>>>>        <reference name="sample" referenced-type="ExpressionSample"/>
>>>>        <reference name="feature" referenced-type="SequenceFeature"/>
>>>> </class>
>>>> On 10/30/20 9:16 AM, [hidden email] wrote:
>>>>> Dear all,
>>>>> We have a community call next Thursday, the 5th of November.
>>>>> What time? The call will be at 17:00 UK time. I think that every
>>>>> country that turns clocks back will have done it before our call
>>>>> on Thursday. Let me know if that is not the case and we will try to
>>>>> rearrange the time.
>>>>> We'll discuss about the model changes related to Espression Data
>>>>> and Kevin will demo some of the newer features implemented in
>>>>> BlueGenes. The call will be recorded for those of you who can't
>>>>> make it, and the notes posted online.
>>>>> I will send you the Agenda and joining link before the call.
>>>>> Have a nice weekend! Daniela
>>>>> _______________________________________________
>>> _______________________________________________
>>> dev mailing list
>>> [hidden email]
>>> https://lists.intermine.org/mailman/listinfo/dev
>>
>> _______________________________________________
>> dev mailing list
>> [hidden email]
>> https://lists.intermine.org/mailman/listinfo/dev
>
> _______________________________________________
> dev mailing list
> [hidden email]
> https://lists.intermine.org/mailman/listinfo/dev

_______________________________________________
dev mailing list
[hidden email]
https://lists.intermine.org/mailman/listinfo/dev