Cron Job Tool

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Cron Job Tool

Mohamed Kassam
Dear all,

I made a tool that is doing analysis every two days and send me a notification by email when the analyis is completed.

I would like to know if I can run this kind of job and how  to integrate this tool in Galaxy tools panel  in Galaxy ? If someone has this experience can help me.


Thanks in advance,

Mohamed


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Re: Cron Job Tool

John Chilton-4
Unfortunately Galaxy has no native support for scheduled jobs or
workflow executions like this. Pretty much all computation in Galaxy
is kicked off by user action or external interaction via the API. So
if you want to place the actual computation inside of Galaxy as a
workflow or a tool you can - then results can be gathered into
histories and visualized for instance and steps tracked - but the
scheduling of its execution would need to be executed by something
like a cron job triggering the API.

I'm not sure if I think Galaxy should add support for this or maybe
just make it easier to trigger such things via the API, but if you
think it should I'd encourage you to add an issue at
https://github.com/galaxyproject/galaxy/issues/new.

Sorry I don't have better news.

-John

On Wed, Sep 13, 2017 at 9:26 AM, Mohamed Kassam <[hidden email]> wrote:

> Dear all,
>
> I made a tool that is doing analysis every two days and send me a
> notification by email when the analyis is completed.
>
> I would like to know if I can run this kind of job and how  to integrate
> this tool in Galaxy tools panel  in Galaxy ? If someone has this experience
> can help me.
>
>
> Thanks in advance,
>
> Mohamed
>
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/