Data manager for ncbi_blast_plus in the main tool shed?

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Data manager for ncbi_blast_plus in the main tool shed?

David Kovalic
Peter,

Thanks.

Dan,

What is your opinion (what work needs to be done to make this production-worthy)? Maybe if my chops are up to it I can take a crack…

David



David Kovalic Ph.D.   PresidentAnalome
phone: +314.496.8808



On Fri, Aug 11, 2017 4:58 AM, Peter Cock [hidden email] wrote:
Hi David,

Daniel Blankenberg wrote one (CC'd):

https://github.com/peterjc/galaxy_blast/tree/master/data_managers/ncbi_blastdb


I've never used it in production and don't have enough understanding
of it and the Data Manager framework to understand what if anything
needs working on.

Locally we have mirrors of the NCBI blast databases (updated with cron),
local databases for organisms of interest - these are all listed in the *.loc
files by hand.

Separately, our users can and do make their own databases within
Galaxy using makeblastdb.

Regards,

Peter

On Thu, Aug 10, 2017 at 10:32 PM, David Kovalic <[hidden email]> wrote:
Hi,

Does anyone know if a data manager exists in the tool shed for creating and integrating NCBI BLAST+ indices within galaxy?

I can't seem to find it in the tools shed or searching the internet  Surly such a tool must exist.

Any info would be greatly appreciated.

Thanks,

David



David Kovalic Ph.D.   PresidentAnalome
phone: +314.496.8808


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