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Ergatis Users

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User support list for the Ergatis bioinformatics workflow management system. Ergatis is a part of the Generic Model Organism Database (GMOD) project. To subscribe to this list, go to Sourceforge.
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Topics (120)
Replies Last Post Views
Ergatis Error by Wimalanathan Kokulap...
0
by Wimalanathan Kokulap...
dynamic queue name by Jaysheel Bhavsar
15
by Jaysheel Bhavsar
workflow setup. by Jaysheel Bhavsar
0
by Jaysheel Bhavsar
PERL5LIB by Mariette
13
by Mariette
Error getCommandCount by Mariette
5
by Mariette
Segmentation fault in start_site_curation by Paul Li
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by Paul Li
v2r17b2 by Mariette
4
by Mariette
Rerun only groups by Celine Noirot
4
by Mahurkar, Anup
grouping hsps in btab format by Chris Hemmerich
1
by Joshua Orvis
runDistributedCommand into iterable component. by Celine Noirot
3
by Mahurkar, Anup
no tty present error by Mariette
2
by Mariette
Component error log files by Laure Devlamynck
6
by Laure Devlamynck
Test version v2r17b2 by Mariette
10
by Arze, Cesar
Problem with "use GUID" in open_reading_frames.pl by Jason Kwan-2
1
by Joshua Orvis
prodigal bsml errors by Aaron Buechlein
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by Aaron Buechlein
Automatic Prokaryotic Annotation Pipeline Datasets by Aaron Buechlein
1
by Kevin Galens
Global variables for pipeline/template? by Jason Kwan-2
4
by Jason Kwan-2
Error While Using SGE by Saneesh_SciGenom
1
by Joshua Orvis
Pipeline stuck at the tRNAscan step by gary_xie
3
by Roxanne
#SGE_DIRECTIVE location by Aaron Buechlein
4
by Aaron Buechlein
ncbi blast+ component by Aaron Buechlein
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by Aaron Buechlein
\u0001 characters and blast2bsml.pl by Aaron Buechlein
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by Aaron Buechlein
question about pipeline output by Roxanne
5
by Chris Hemmerich
Problem with promote_gene_prediction.pl? by Roxanne
3
by Roxanne
problems opening http://myserver/ergatis by stacy xu
1
by Joshua Orvis
Question about re-run of pipeline by Roxanne
7
by Jason Kwan-2
Undefined subroutine &main::get_perl_bins called at Makefile.PL line 130. by Hazard, E. Starr
1
by Joshua Orvis
Question about cluster jobs by Roxanne
1
by Mahurkar, Anup
Looking For Old COG assignment bug by Aaron Buechlein
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by Aaron Buechlein
Ergatis installation problem by Matthew Wade
1
by Joshua Orvis
Pipeline failure/restart by Roxanne
3
by Joshua Orvis
missing the tchar index (.tci) file by gary_xie
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by gary_xie
The link for documentation of component lipop is wrong by gary_xie
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by gary_xie
parse_evidence error by gary_xie
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by gary_xie
NullPointerException issue - happens upon first execution of a pipeline by Ian Paredes
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by Ian Paredes
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