Ergatis Users

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User support list for the Ergatis bioinformatics workflow management system. Ergatis is a part of the Generic Model Organism Database (GMOD) project. To subscribe to this list, go to Sourceforge.
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Topics (120)
Replies Last Post Views
NullPointerException issue - happens upon first execution of a pipeline by Ian Paredes
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by Ian Paredes
error message on the one-step workflow: formatdb by gary_xie
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by Jason Kwan-2
New Workflow Engine release (3.1.5) by Joshua Orvis
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by Joshua Orvis
running my first pipeline by kmuthuraman
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by Joshua Orvis
Mac compatibility - other things by Jason Kwan
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by Jason Kwan
Fix for file locking problems on Mac and smb by Jason Kwan
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by Joshua Orvis
hmmpfam3 component incomplete? by ML mail
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by ML mail
Run workflow permission denied by gary_xie
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by Joshua Orvis
parse_evidence.ber_pre using BERUniprot by Aaron Buechlein
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by Joshua Orvis
Pipeline stuck by ML mail
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by Jason Kwan
hmmpfam component and hmmconvert problems by ML mail
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by Chris Hemmerich
commandSet type="parallel" by Mariette
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by Jason Kwan
questions about Ergatis components installation by gary_xie
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by gary_xie
prokaryotic genome annotation template and all needed components by gary_xie
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by gary_xie
p_func component obsolete? by ML mail
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by ML mail
Run workflow permission denied by Jason Kwan
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by Jason Kwan
Only linux supported? by Jason Kwan
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by Chris Hemmerich
Which version of Workflow for production? by Chris Hemmerich
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by Chris Hemmerich
Problem with stdin/stdout by Mariette
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by Joshua Orvis
replacing xdformat with formatdb in prok. annotation pipeline by Chris Hemmerich
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by Chris Hemmerich
Component blocked in running by Nicolas Allias
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by Nicolas Allias
Does an execution host hav to be a submit host? by Schobesberger Richar...
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by Joshua Orvis
replace template keys in ncbi-blastp failing with exit value 9 by ML mail
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by ML mail
Running command on different queue. by Schobesberger Richar...
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by Schobesberger Richar...
March 2011 GMOD Meeting early registration closes this Friday by Dave Clements
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by Dave Clements
RunWorkflow not identifying Aborted SGE jobs? by Aaron Gussman
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by Aaron Gussman
concatenate_files input by Nicolas Allias
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by Nicolas Allias
GMOD Satellite Meetings, March 7, NESCent, Durham, NC by Dave Clements
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by Dave Clements
March 2011 GMOD Meeting Registration is now open by Dave Clements
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by Dave Clements
Saved pipeline template that includes another pipeline template? by Aaron Gussman
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by Kevin Galens
ergatis and gbrowse2 by Mariette
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by Joshua Orvis
Re: pipeline freezes in running state whereas no job is running by Schobesberger Richar...
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by Mahurkar, Anup
New components by Mariette
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by Joshua Orvis
create_file_iterator_list by Mariette
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by Mariette
question about tigr_roles_keywords.txt by Chris Hemmerich
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by Joshua Orvis
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