[Ergatis-devel] bug in bsml2interevidence_fasta.pl ?

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[Ergatis-devel] bug in bsml2interevidence_fasta.pl ?

Chris Hemmerich

I haven't looked at this component before, but it looks like there is a
bug on line 140. I think the code is there to check the region between the
last feature and the right end of the contig. However, $right is still set
to the start position of the last feature rather than the end of the
contig.

Can someone confirm if this is a bug or design choice? I made the
following patch to our install with picks up that peice of sequence.

+  $right = length($seqs->{$mol}->{'residues'})-1;
   if( ($right - $left) >= $length_cutoff ) {


Thanks,
  Chris

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