Ergatis

Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines. It contains pre-built components for common bioinformatics analysis tasks. These components can be arranged graphically to form highly-configurable pipelines.  Ergatis is a part of the GMOD Project.

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Topics (140)
Replies Last Post Views Sub Forum
Looking For Old COG assignment bug by Aaron Buechlein
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by Aaron Buechlein
Ergatis Users
Ergatis installation problem by Matthew Wade
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by Joshua Orvis
Ergatis Users
Pipeline failure/restart by Roxanne
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by Joshua Orvis
Ergatis Users
missing the tchar index (.tci) file by gary_xie
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by gary_xie
Ergatis Users
The link for documentation of component lipop is wrong by gary_xie
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by gary_xie
Ergatis Users
parse_evidence error by gary_xie
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by gary_xie
Ergatis Users
[Ergatis-devel] Ergatis Release by Kevin Galens
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by Kevin Galens
Ergatis Development
NullPointerException issue - happens upon first execution of a pipeline by Ian Paredes
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by Ian Paredes
Ergatis Users
NullPointerException issue - happens upon first execution of a pipeline by Ian Paredes
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by Ian Paredes
Ergatis Users
error message on the one-step workflow: formatdb by gary_xie
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by Jason Kwan-2
Ergatis Users
New Workflow Engine release (3.1.5) by Joshua Orvis
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by Joshua Orvis
Ergatis Users
running my first pipeline by kmuthuraman
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by Joshua Orvis
Ergatis Users
Mac compatibility - other things by Jason Kwan
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by Jason Kwan
Ergatis Users
Fix for file locking problems on Mac and smb by Jason Kwan
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by Joshua Orvis
Ergatis Users
hmmpfam3 component incomplete? by ML mail
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by ML mail
Ergatis Users
Run workflow permission denied by gary_xie
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by Joshua Orvis
Ergatis Users
parse_evidence.ber_pre using BERUniprot by Aaron Buechlein
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by Joshua Orvis
Ergatis Users
Pipeline stuck by ML mail
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by Jason Kwan
Ergatis Users
hmmpfam component and hmmconvert problems by ML mail
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by Chris Hemmerich
Ergatis Users
commandSet type="parallel" by Mariette
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by Jason Kwan
Ergatis Users
questions about Ergatis components installation by gary_xie
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by gary_xie
Ergatis Users
prokaryotic genome annotation template and all needed components by gary_xie
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by gary_xie
Ergatis Users
p_func component obsolete? by ML mail
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by ML mail
Ergatis Users
Run workflow permission denied by Jason Kwan
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by Jason Kwan
Ergatis Users
Only linux supported? by Jason Kwan
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by Chris Hemmerich
Ergatis Users
Which version of Workflow for production? by Chris Hemmerich
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by Chris Hemmerich
Ergatis Users
Problem with stdin/stdout by Mariette
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by Joshua Orvis
Ergatis Users
replacing xdformat with formatdb in prok. annotation pipeline by Chris Hemmerich
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by Chris Hemmerich
Ergatis Users
Component blocked in running by Nicolas Allias
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by Nicolas Allias
Ergatis Users
[Ergatis-devel] bug in bsml2interevidence_fasta.pl ? by Chris Hemmerich
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by Chris Hemmerich
Ergatis Development
Does an execution host hav to be a submit host? by Schobesberger Richar...
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by Joshua Orvis
Ergatis Users
[Ergatis-devel] "submit_pipelines_as_jobs" feedback by Chris Hemmerich
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by Joshua Orvis
Ergatis Development
replace template keys in ncbi-blastp failing with exit value 9 by ML mail
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by ML mail
Ergatis Users
Running command on different queue. by Schobesberger Richar...
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by Schobesberger Richar...
Ergatis Users
[Ergatis-devel] March 2011 GMOD Meeting early registration closes this Friday by Dave Clements
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by Dave Clements
Ergatis Development
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