Error during FASTQ preview

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Error during FASTQ preview

Previti

Dear all,

I've recently had following error occur on our local Galaxy instance.

Every time I want to preview a fastq file it gives this:

Content Encoding Error

The page you are trying to view cannot be shown because it uses an invalid or unsupported form of compression.

    Please contact the website owners to inform them of this problem.

Any idea how to solve this...? This is the first time I'm seeing it....I tried changing the data type multiple times (fastq, fastq.gz, fastqsanger...etc) but this doesn't get rid of it.

Best regards,

Christopher Previti



--
Dr. Christopher Previti
Genomics and
Proteomics Core Facility
High Throughput Sequencing (W190)
Bioinformatician

German Cancer Research Center (DKFZ)
Foundation under Public Law
Im Neuenheimer Feld 580
69120 Heidelberg
Germany
Room: B2.102 (INF580/TP3)
Phone: +49 6221 42-4661

christopher.previti@...
www.dkfz.de

Management Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta
VAT-ID No.: DE143293537

Vertraulichkeitshinweis: Diese Nachricht ist ausschließlich für die Personen bestimmt, an die sie adressiert ist.
Sie kann vertrauliche und/oder nur für den/die Empfänger bestimmte Informationen enthalten. Sollten Sie nicht
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Jegliche unbefugte Verwendung der Informationen in dieser Nachricht ist untersagt.



    

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Re: Error during FASTQ preview

Peter Cock
This could be a special character unicode issue, but my guess
is something has gone wrong with compression.

Can you identify the file on disk (easy via the history "i" for
information icon if this option is enabled; by default Galaxy
does not tell you the file path)?

Then try the Unix command "head" on the file to inspect it
manually - is it plain text FASTQ?

Peter

On Tue, Mar 13, 2018 at 4:02 PM, Previti
<[hidden email]> wrote:

> Dear all,
>
> I've recently had following error occur on our local Galaxy instance.
>
> Every time I want to preview a fastq file it gives this:
>
> Content Encoding Error
>
> The page you are trying to view cannot be shown because it uses an invalid
> or unsupported form of compression.
>
>     Please contact the website owners to inform them of this problem.
>
> Any idea how to solve this...? This is the first time I'm seeing it....I
> tried changing the data type multiple times (fastq, fastq.gz,
> fastqsanger...etc) but this doesn't get rid of it.
>
> Best regards,
>
> Christopher Previti
>
>
>
> --
> Dr. Christopher Previti
> Genomics and Proteomics Core Facility
> High Throughput Sequencing (W190)
> Bioinformatician
>
> German Cancer Research Center (DKFZ)
> Foundation under Public Law
> Im Neuenheimer Feld 580
> 69120 Heidelberg
> Germany
> Room: B2.102 (INF580/TP3)
> Phone: +49 6221 42-4661
>
> [hidden email]
> www.dkfz.de
>
> Management Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta
> VAT-ID No.: DE143293537
>
> Vertraulichkeitshinweis: Diese Nachricht ist ausschließlich für die Personen
> bestimmt, an die sie adressiert ist.
> Sie kann vertrauliche und/oder nur für den/die Empfänger bestimmte
> Informationen enthalten. Sollten Sie nicht
> der bestimmungsgemäße Empfänger sein, kontaktieren Sie bitte den Absender
> und löschen Sie die Mitteilung.
> Jegliche unbefugte Verwendung der Informationen in dieser Nachricht ist
> untersagt.
>
>
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/
<div class="gmail_extra"><br><div class="gmail_quote">On Tue, Mar 13,
2018 at 4:02 PM, Previti <span dir="ltr">&lt;<a
href="mailto:[hidden email]"
target="_blank">[hidden email]</a>&gt;</span>
wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">




  <div text="#000000" bgcolor="#FFFFFF">
    <p>Dear all,</p>
    <p>I've recently had following error occur on our local Galaxy
      instance.</p>
    <p>Every time I want to preview a fastq file it gives this:</p>
    <p>Content Encoding Error<br>
      <br>
      The page you are trying to view cannot be shown because it uses an
      invalid or unsupported form of compression.<br>
      <br>
      &nbsp;&nbsp;&nbsp; Please contact the website owners to inform
them of this
      problem.<br>
      <br>
      Any idea how to solve this...? This is the first time I'm seeing
      it....I tried changing the data type multiple times (fastq,
      fastq.gz, fastqsanger...etc) but this doesn't get rid of it.<br>
    </p>
    <p>Best regards,</p>
    <p>Christopher Previti<br>
    </p>
    <p><br>
    </p>
    <p><br>
    </p>
    <div class="m_-2862158338684152881moz-signature">-- <br>
      <b><span style="font-size:10.0pt;font-family:&quot;Arial&quot;,&quot;sans-serif&quot;;color:#0047b9">Dr.
          Christopher Previti</span></b><span
style="font-size:10.0pt;font-family:&quot;Arial&quot;,&quot;sans-serif&quot;;color:gray"><br>
        <font color="#000000">Genomics and </font></span><span
style="font-size:10pt;font-family:&quot;Arial&quot;,&quot;sans-serif&quot;"
lang="EN-US">Proteomics
        Core Facility</span><span
style="font-size:10pt;font-family:&quot;Arial&quot;,&quot;sans-serif&quot;"
lang="EN-US"><br>
        High Throughput Sequencing (W190)<br>
        Bioinformatician<br>
      </span>
      <p class="MsoNormal"><span
style="font-size:10pt;font-family:&quot;Arial&quot;,&quot;sans-serif&quot;"><font
color="#0047b9">German Cancer Research Center (DKFZ)</font><br>
          Foundation under Public Law<br>
          Im Neuenheimer Feld 580<br>
          69120 Heidelberg<br>
          Germany<br>
          Room: B2.102 (INF580/TP3)<br>
          Phone: <a href="tel:+49%206221%20424661"
value="+496221424661" target="_blank">+49 6221 42-4661</a><br>
        </span></p>
      <p class="MsoNormal"><span><a href="http://www.dkfz.de/"
target="_blank"
data-saferedirecturl="https://www.google.com/url?hl=en&amp;q=http://www.dkfz.de/&amp;source=gmail&amp;ust=1521043877592000&amp;usg=AFQjCNEvBdKF2YTYWA7XNiCe7e4pzzkuwg"><span
style="font-size:10.0pt;font-family:&quot;Arial&quot;,&quot;sans-serif&quot;;color:#0047b9">[hidden email]</span></a><br>
          <a href="http://www.dkfz.de/" target="_blank"
data-saferedirecturl="https://www.google.com/url?hl=en&amp;q=http://www.dkfz.de/&amp;source=gmail&amp;ust=1521043877592000&amp;usg=AFQjCNEvBdKF2YTYWA7XNiCe7e4pzzkuwg"><span
style="font-size:10.0pt;font-family:&quot;Arial&quot;,&quot;sans-serif&quot;;color:#0047b9">www.dkfz.de</span></a><u></u>
            <br>
          <u></u></span></p>
      <p class="MsoNormal" style="text-autospace:none"><span
style="font-size:10pt;font-family:&quot;Arial&quot;,&quot;sans-serif&quot;"
lang="EN-US">Management
          Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta<br>
          VAT-ID No.: DE143293537</span></p>
      <p class="MsoNormal m_-2862158338684152881style="><span
style="font-size:10pt;font-family:&quot;Arial&quot;,&quot;sans-serif&quot;"
lang="EN-US">Vertraulichkeitshinweis:
          Diese Nachricht ist ausschließlich für die Personen bestimmt,
          an die sie adressiert ist. <br>
          Sie kann vertrauliche und/oder nur für den/die Empfänger
          bestimmte Informationen enthalten. Sollten Sie nicht <br>
          der bestimmungsgemäße
          Empfänger sein, kontaktieren Sie bitte den Absender und
          löschen Sie die Mitteilung. <br>
          Jegliche unbefugte Verwendung der Informationen in dieser
          Nachricht ist untersagt.<br>
          <span style="font-size:10.0pt"><u></u><u></u></span></span></p>
      <p class="MsoNormal"><span style="font-size:10.0pt"><u></u>
<u></u></span></p>
      <br>
      <pre class="m_-2862158338684152881moz-signature" cols="72"></pre>
    </div>
  </div>

<br>______________________________<wbr>_____________________________<br>
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<br>
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target="_blank">http://galaxyproject.org/<wbr>search/</a><br></blockquote></div><br></div>
___________________________________________________________
Please keep all replies on the list by using "reply all"
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