FW: [MarkerPaper] ICGC 2

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FW: [MarkerPaper] ICGC 2

Arek Kasprzyk-2
FW: [MarkerPaper] ICGC 2

Hi everyone,
Just to keep you updated on the 0.8 progress. The ICGC DCC website has now been released on the 0.8 rc2 that includes some new features that maybe of interest to you


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Arek Kasprzyk
Director, Bioinformatics Operations and Principal Investigator

Ontario Institute for Cancer Research
MaRS Centre, South Tower
101 College Street, Suite 800
Toronto, Ontario, Canada M5G 0A3
            
Tel:                        416-673-8559
Toll-free:             1-866-678-6427
www.oicr.on.ca
 
This message and any attachments may contain confidential and/or privileged information for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this message in error, please contact the sender and delete all copies. Opinions, conclusions or other information contained in this message may not be that of the organization.
 



ICGC 2 Dear All,

The ICGC Data Coordination Centre is pleased to announce the release of version 2 of the ICGC data portal (http://dcc.icgc.org), which includes several new features such as:
 
Ø      Mutation consequences for all ICGC tumours;
Ø      Malignant melanoma and small cell lung carcinoma simple mutations remapped to the GRCh37 assembly;
Ø      The Tumor Sequencing Project lung adenocarcinoma dataset;
Ø      A gene centric query interface;
Ø      An identifiers search function;
Ø      Gene reports integrating mutation data from the ICGC as well as data from Ensembl, KEGG pathways and the Pancreatic Expression Database;
Ø      Sample reports containing basic donor and diagnostic information;
Ø      New visualization tools, presenting genes and pathways affected by reported mutations.
  
Best regards,
 
Arek

Arek Kasprzyk
Director, Bioinformatics Operations and Principal Investigator

Ontario Institute for Cancer Research
MaRS Centre, South Tower
101 College Street, Suite 800
Toronto, Ontario, Canada M5G 0A3
            
Tel:                        416-673-8559
Toll-free:             1-866-678-6427
www.oicr.on.ca

Jennifer Jennings

Senior Project Manager – ICGC Secretariat
International Cancer Genome Consortium

MaRS Centre, South Tower
101 College Street, Suite 800
Toronto, Ontario, Canada M5G 0A3
      
Tel:       416-673-6526
BBerry: 416-278-5383
Fax:      416-977-7446
Toll-free:1-866-678-6427
www.oicr.on.ca

This message and any attachments may contain confidential and/or privileged information for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this message in error, please contact the sender and delete all copies. Opinions, conclusions or other information contained in this message may not be that of the organization.


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