Filter data and cut column bugs

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Filter data and cut column bugs

Peter Cock
Hi all,

I filled the following bugs 2 weeks ago, with patches:

https://bitbucket.org/galaxy/galaxy-central/issue/537/
Filter data on any column tool casts unused columns

https://bitbucket.org/galaxy/galaxy-central/issue/536/
Filter data on any column tools shows nonsense % vs total on stdout

https://bitbucket.org/galaxy/galaxy-central/issue/535/
Filter data on any column tool complains about hash comment lines

https://bitbucket.org/galaxy/galaxy-central/issue/534/
Cut column tool messes up # header lines

I'm sure the team has been busier than usual with the run up
to the Galaxy Community Conference (hopefully I'll see you all
tomorrow night - fingers crossed the ash from the Grimsvotn
volcano doesn't cause too much trouble)...

However, for future reference would it help if I emailed
the list in parallel with filing bugs? None of these issues
individually are overly complicated, and the sooner they
get looked at the more likely it is my patches will still
apply cleanly.

Thanks,

Peter
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Re: Filter data and cut column bugs

Anton Nekrutenko
Dear Peter:

Yes, that would help. But, you patches are definitely not unnoticed. We'll apply them (likely at the conference) and we are also in the process of devising a strategy for doing so quickly and consistently.

See you on Tuesday.

a.

 
Anton Nekrutenko
http://nekrut.bx.psu.edu
http://usegalaxy.org



On May 23, 2011, at 10:02 AM, Peter Cock wrote:

> However, for future reference would it help if I emailed
> the list in parallel with filing bugs? None of these issues
> individually are overly complicated, and the sooner they
> get looked at the more likely it is my patches will still
> apply cleanly.


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Re: Filter data and cut column bugs

Peter Cock
On Mon, May 23, 2011 at 3:09 PM, Anton Nekrutenko <[hidden email]> wrote:
> Dear Peter:
>
> Yes, that would help.

One possibility would be to have all new bugs CC'd to the dev
mailing list? Not sure if everyone here would like that or not...

> But, you patches are definitely not unnoticed. We'll apply them
> (likely at the conference) and we are also in the process of
> devising a strategy for doing so quickly and consistently.

That sounds good :)

>
> See you on Tuesday.
>
> a.

Thanks,

Peter
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Re: Filter data and cut column bugs

Peter Cock
On Mon, May 23, 2011 at 3:34 PM, Peter Cock <[hidden email]> wrote:

> On Mon, May 23, 2011 at 3:09 PM, Anton Nekrutenko <[hidden email]> wrote:
>> Dear Peter:
>>
>> Yes, that would help.
>
> One possibility would be to have all new bugs CC'd to the dev
> mailing list? Not sure if everyone here would like that or not...
>
>> But, you patches are definitely not unnoticed. We'll apply them
>> (likely at the conference) ...

Kanwei has just applied the fix for issues 535 and 537, thanks!

https://bitbucket.org/galaxy/galaxy-central/issue/535/
Filter data on any column tool complains about hash comment lines

https://bitbucket.org/galaxy/galaxy-central/issue/537/
Filter data on any column tool casts unused columns

That leaves these two pending,

https://bitbucket.org/galaxy/galaxy-central/issue/534/
Cut column tool messes up # header lines

https://bitbucket.org/galaxy/galaxy-central/issue/536/
Filter data on any column tools shows nonsense % vs total on stdout

While I'm looking over minor bugs where I submitted a
patch, the following should also be fairly quick to review:

FASTQ to Tabular tool doesn't accept plain FASTQ
https://bitbucket.org/galaxy/galaxy-central/issue/436/

<Conditional> does not work with scripts in different path
https://bitbucket.org/galaxy/galaxy-central/issue/159/

Regards,

Peter
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