Fwd: Using Gbrowse_img highlighting

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Fwd: Using Gbrowse_img highlighting

girlwithglasses
Can someone help Paul with his GBrowse img problem? See below for details.

---------- Forwarded message ----------
From: Paul Hale <[hidden email]>
Date: Fri, Feb 22, 2013 at 7:17 AM
Subject: RE: Using Gbrowse_img highlighting
To: "[hidden email]" <[hidden email]>


Amelia,

Thanks for your response, no we have not solved the problem.  We were using this feature in an older Gbrowse 1.x database to show trap insertion position however we recently switched over to GBrowse 2 and the feature no longer seems to work.  Essentially what I need is some way of showing a point on a generated gbrowse_img.  From what I could see that function had been depreciated but I'm not sure.  Any help would be great.

Paul Hale

-----Original Message-----
From: [hidden email] [mailto:[hidden email]]
Sent: Thursday, February 21, 2013 4:52 PM
To: Paul Hale
Subject: Using Gbrowse_img highlighting

Hello Paul,

Do you still need help with your issue or have you solved the problem?


<quote author='Paul Hale'>
Hello All,

I am attempting to use the gbrowse_img function to show a specific location within a gene.  This used to be accomplished by the h_region feature on gbrowse 1 where a single basepair was highlighted giving the effect of a blue line thru that part of the gene.  That does not appear to be working
anymore.   I have also had no luck using the add parameter in any
combination of configurations . Are either of these features working still or is there any other feature that I could use to mark a location within a gene to similar effect? I am running 2.39 currently.

Thanks
Paul

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</quote>
Quoted from:
http://gmod.827538.n3.nabble.com/Using-Gbrowse-img-highlighting-tp4028556.html

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--
Amelia Ireland
GMOD Community Support || http://gmod.org

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Re: Fwd: Using Gbrowse_img highlighting

Nathan Weeks
Hi Paul,

This issue may have been fixed in GBrowse 2.45:

http://sourceforge.net/tracker/index.php?func=detail&aid=3182492&group_id=27707&atid=391291

--
Nathan Weeks
IT Specialist
USDA-ARS Corn Insects and Crop Genetics Research Unit
http://weeks.public.iastate.edu/


On Mon, Feb 25, 2013 at 2:39 PM,
<[hidden email]> wrote:

> Message: 6
> Date: Fri, 22 Feb 2013 08:10:18 -0800
> From: Amelia Ireland <[hidden email]>
> Subject: [Gmod-gbrowse] Fwd: Using Gbrowse_img highlighting
> To: "[hidden email]"
>         <[hidden email]>
> Cc: [hidden email]
> Message-ID:
>         <[hidden email]>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Can someone help Paul with his GBrowse img problem? See below for details.
>
> ---------- Forwarded message ----------
> From: Paul Hale <[hidden email]>
> Date: Fri, Feb 22, 2013 at 7:17 AM
> Subject: RE: Using Gbrowse_img highlighting
> To: "[hidden email]" <[hidden email]>
>
>
> Amelia,
>
> Thanks for your response, no we have not solved the problem.  We were using
> this feature in an older Gbrowse 1.x database to show trap insertion
> position however we recently switched over to GBrowse 2 and the feature no
> longer seems to work.  Essentially what I need is some way of showing a
> point on a generated gbrowse_img.  From what I could see that function had
> been depreciated but I'm not sure.  Any help would be great.
>
> Paul Hale
>
> -----Original Message-----
> From: [hidden email] [mailto:[hidden email]]
> Sent: Thursday, February 21, 2013 4:52 PM
> To: Paul Hale
> Subject: Using Gbrowse_img highlighting
>
> Hello Paul,
>
> Do you still need help with your issue or have you solved the problem?
>
>
> <quote author='Paul Hale'>
> Hello All,
>
> I am attempting to use the gbrowse_img function to show a specific location
> within a gene.  This used to be accomplished by the h_region feature on
> gbrowse 1 where a single basepair was highlighted giving the effect of a
> blue line thru that part of the gene.  That does not appear to be working
> anymore.   I have also had no luck using the add parameter in any
> combination of configurations . Are either of these features working still
> or is there any other feature that I could use to mark a location within a
> gene to similar effect? I am running 2.39 currently.
>
> Thanks
> Paul
>
> The information in this email, including attachments, may be confidential
> and is intended solely for the addressee(s). If you believe you received
> this email by mistake, please notify the sender by return email as soon as
> possible.
>
> ------------------------------------------------------------------------------
> Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC,
> Windows 8 Apps, JavaScript and much more. Keep your skills current with
> LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and
> experts. ON SALE this month only -- learn more at:
> http://p.sf.net/sfu/learnnow-d2d
> _______________________________________________
> Gmod-gbrowse mailing list
> [hidden email]
> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>
> </quote>
> Quoted from:
> http://gmod.827538.n3.nabble.com/Using-Gbrowse-img-highlighting-tp4028556.html
>
> The information in this email, including attachments, may be confidential
> and is intended solely for the addressee(s). If you believe you received
> this email by mistake, please notify the sender by return email as soon as
> possible.
>
>
>
> --
> Amelia Ireland
> GMOD Community Support || http://gmod.org

------------------------------------------------------------------------------
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Download AppDynamics Lite for free today:
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