Fwd: download gff3

classic Classic list List threaded Threaded
1 message Options
Reply | Threaded
Open this post in threaded view

Fwd: download gff3

Dave Clements
Hi Ping,

Alessandra Bilardi at GBrowse.org forwarded your question to me, and I'm responding to it on the GBrowse mailing list, which is the best place to discuss questions like this.

To answer your question, more recent versions of GBrowse can show a "save" icon (looks like a floppy disk) to the left of the track name.  Clicking on that will give you the choice of downloading the displayed region of the track, the whole track for the current chromosome/contig, or the track for all contigs/chromosomes.

What version of GBrowse is the site running with?  Where is the site you want to download data from?

Please keep responses on the list,

Dave C

---------- Forwarded message ----------
From: ping zheng <[hidden email]>
Date: Tue, Oct 26, 2010 at 9:21 PM
Subject: download gff3
To: [hidden email]


Some users want to download ENTIRE gff3 file of the track ( not only
currently view region, i.e. they pick one track with 100 super contigs
for total , they want the gff3 file for all 100 super contigs ) from
the GBrowse dropdown list.  I am not sure if it is doable.  If it is
doable, would let me know how I can make it happen?

Thank you for your help,


Nokia and AT&T present the 2010 Calling All Innovators-North America contest
Create new apps & games for the Nokia N8 for consumers in  U.S. and Canada
$10 million total in prizes - $4M cash, 500 devices, nearly $6M in marketing
Develop with Nokia Qt SDK, Web Runtime, or Java and Publish to Ovi Store
Gmod-gbrowse mailing list
[hidden email]