GBrowse rendering track error

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GBrowse rendering track error

empyrean
Hello All,

GBrowse was working perfectly fine and since 2 days the tracks are not loading and i am getting the following error. Any suggestions on what is going on?

Use of uninitialized value in exists at /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi/Bio/Graphics/Browser2.pm line 395., referer:.....

[error] [client 1.1.1.2] [50778] rendering error track:  Can't connect to 1.2.1.11:85 (Connection refused) at /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi/Bio/Graphics/Browser2/Render.pm line 3531.

Thanks


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Re: GBrowse rendering track error

Scott Cain
Hi,

So is it configured to connect to a rendering machine at 1.2.1.11 on port 85?  It seems a little odd, but could be.  Please check your configuration files for this.

Scott



On Thu, Apr 3, 2014 at 3:30 PM, empyrean999 <[hidden email]> wrote:
Hello All,

GBrowse was working perfectly fine and since 2 days the tracks are not loading and i am getting the following error. Any suggestions on what is going on?

Use of uninitialized value in exists at /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi/Bio/Graphics/Browser2.pm line 395., referer:.....

[error] [client 1.1.1.2] [50778] rendering error track:  Can't connect to 1.2.1.11:85 (Connection refused) at /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi/Bio/Graphics/Browser2/Render.pm line 3531.

Thanks


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Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

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Re: GBrowse rendering track error

empyrean
Hello Scott,

the entire error file looks like this


[error] [client 190.120.153.201] [35918] rendering error track:  Can't connect to 165.234.11.157:8705 (Connection refused) at /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi/Bio/Graphics/Browser2/Render.pm line 3531., referer: http://




On Thu, Apr 3, 2014 at 3:34 PM, Scott Cain <[hidden email]> wrote:
Hi,

So is it configured to connect to a rendering machine at 1.2.1.11 on port 85?  It seems a little odd, but could be.  Please check your configuration files for this.

Scott



On Thu, Apr 3, 2014 at 3:30 PM, empyrean999 <[hidden email]> wrote:
Hello All,

GBrowse was working perfectly fine and since 2 days the tracks are not loading and i am getting the following error. Any suggestions on what is going on?

Use of uninitialized value in exists at /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi/Bio/Graphics/Browser2.pm line 395., referer:.....

[error] [client 1.1.1.2] [50778] rendering error track:  Can't connect to 1.2.1.11:85 (Connection refused) at /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi/Bio/Graphics/Browser2/Render.pm line 3531.

Thanks


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--
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Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     <a href="tel:216-392-3087" value="+12163923087" target="_blank">216-392-3087
Ontario Institute for Cancer Research


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Re: GBrowse rendering track error

Scott Cain
So there are multiple questions at this point:

1. Can you reach 165.234.11.157 from your GBrowse server (assuming it's a separate server)?

2. Is port 8705 open?

3. Is the gbrowse-slave daemon running?

4. If you remove the gbrowse-slave stuff from your GBrowse conf file, does GBrowse work then?



On Thu, Apr 3, 2014 at 3:43 PM, empyrean999 <[hidden email]> wrote:
Hello Scott,

the entire error file looks like this


[error] [client 190.120.153.201] [35918] rendering error track:  Can't connect to 165.234.11.157:8705 (Connection refused) at /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi/Bio/Graphics/Browser2/Render.pm line 3531., referer: http://




On Thu, Apr 3, 2014 at 3:34 PM, Scott Cain <[hidden email]> wrote:
Hi,

So is it configured to connect to a rendering machine at 1.2.1.11 on port 85?  It seems a little odd, but could be.  Please check your configuration files for this.

Scott



On Thu, Apr 3, 2014 at 3:30 PM, empyrean999 <[hidden email]> wrote:
Hello All,

GBrowse was working perfectly fine and since 2 days the tracks are not loading and i am getting the following error. Any suggestions on what is going on?

Use of uninitialized value in exists at /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi/Bio/Graphics/Browser2.pm line 395., referer:.....

[error] [client 1.1.1.2] [50778] rendering error track:  Can't connect to 1.2.1.11:85 (Connection refused) at /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi/Bio/Graphics/Browser2/Render.pm line 3531.

Thanks


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--
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     <a href="tel:216-392-3087" value="+12163923087" target="_blank">216-392-3087
Ontario Institute for Cancer Research




--
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

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