GBrowse - state of resource/bug-fixing

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GBrowse - state of resource/bug-fixing

Keiran Raine
Hi,

Can anyone tell me what the state of play is with regard to GBrowse fixes and resourcing is?

There seems to be very little activity relating to responses to new tickets.

Thanks,

Keiran Raine
Principal Bioinformatician
Cancer Genome Project
Wellcome Trust Sanger Institute

Tel:+44 (0)1223 834244 Ext: 7703
Office: H104


-- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.

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Re: GBrowse - state of resource/bug-fixing

Scott Cain
Hi Keiran,

GBrowse isn't dead!  Lincoln is still the lead developer (and understands the code base waaaay better than I do), but he's crazy busy.  Are there bugs that are showstoppers for you?

Scott



On Wed, Nov 27, 2013 at 8:15 AM, Keiran Raine <[hidden email]> wrote:
Hi,

Can anyone tell me what the state of play is with regard to GBrowse fixes and resourcing is?

There seems to be very little activity relating to responses to new tickets.

Thanks,

Keiran Raine
Principal Bioinformatician
Cancer Genome Project
Wellcome Trust Sanger Institute

Tel:<a href="tel:%2B44%20%280%291223%20834244%C2%A0Ext%3A%207703" value="+441223834244" target="_blank">+44 (0)1223 834244 Ext: 7703
Office: H104


-- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.

------------------------------------------------------------------------------
Rapidly troubleshoot problems before they affect your business. Most IT
organizations don't have a clear picture of how application performance
affects their revenue. With AppDynamics, you get 100% visibility into your
Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro!
http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk
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--
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Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

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Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro!
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Re: GBrowse - state of resource/bug-fixing

Keiran Raine
Hi Scott,

Looks like you've picked up the one that's the biggest issue (gtf2gff3.pl).  The issue with subtracks isn't a showstopper as I've just stopped splitting into subtracks.

I've also submitted patches for users of fastcgi with many datasources (to prevent eternal startup).

(see you in San Diego hopefully)

Regards,

Keiran Raine
Principal Bioinformatician
Cancer Genome Project
Wellcome Trust Sanger Institute

Tel:+44 (0)1223 834244 Ext: 7703
Office: H104

On 27 Nov 2013, at 17:48, Scott Cain <[hidden email]> wrote:

Hi Keiran,

GBrowse isn't dead!  Lincoln is still the lead developer (and understands the code base waaaay better than I do), but he's crazy busy.  Are there bugs that are showstoppers for you?

Scott



On Wed, Nov 27, 2013 at 8:15 AM, Keiran Raine <[hidden email]> wrote:
Hi,

Can anyone tell me what the state of play is with regard to GBrowse fixes and resourcing is?

There seems to be very little activity relating to responses to new tickets.

Thanks,

Keiran Raine
Principal Bioinformatician
Cancer Genome Project
Wellcome Trust Sanger Institute

Tel:<a href="tel:%2B44%20%280%291223%20834244%C2%A0Ext%3A%207703" value="+441223834244" target="_blank">+44 (0)1223 834244 Ext: 7703
Office: H104


-- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.

------------------------------------------------------------------------------
Rapidly troubleshoot problems before they affect your business. Most IT
organizations don't have a clear picture of how application performance
affects their revenue. With AppDynamics, you get 100% visibility into your
Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro!
http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk
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--
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research


-- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.

------------------------------------------------------------------------------
Rapidly troubleshoot problems before they affect your business. Most IT
organizations don't have a clear picture of how application performance
affects their revenue. With AppDynamics, you get 100% visibility into your
Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro!
http://pubads.g.doubleclick.net/gampad/clk?id=84349351&iu=/4140/ostg.clktrk
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