GMOD

 Mailing lists related to the Generic Model Organism Database (GMOD) Project.
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Topics (18771)
Replies Last Post Views Sub Forum
Installing Tool Dependencies by Tom Misilo
6
by Gudrun Mareike Amedi...
Galaxy Development
[biomart-users] Error in curl::curl_fetch_memory(url, handle = handle) : Maximum (10) redirects followed by Helen Kershaw
2
by Helen Kershaw
BioMart User and Developer Support
How sensitive is MAKER to redundant/partial transcripts? by Lior Glick-2
2
by 史俊鹏
MAKER
Maker Error : Thread 1 terminated abnormally.. André Machado <andremmachado25@gmail.com> AttachmentsJun 26 (8 days ago) to maker-devel Hi , First of all thanks for your efforts in Maker pipeline. Its a tremendous help for the people that works with genomes. In the last 4 days i have broke my head.. with an error .. but still without a solution. I found this old thread: https://groups.google.com/forum/#!msg/maker-devel/X2-76BH9gvg/rU4kLJ3B6tsJ Seems to be a quite similar... but don't point to a specific solution. I have run maker with the data test and all runned ok. Maker finalize the entire process without errors. Recently, i’m trying to aplly my own data on MPI cluster. But this error, frequently occurred. Thread 1 terminated abnormally: ../dna.maker.output/mpi_blastdb/dna%2Efa.mpi.1/dna%2Efa.mpi.1.0 --> rank=8, hostname=compute-0-1.local, at ../Analysis/Geno/maker/bin/maker line 1451 thread 1. --> rank=8, hostname=compute-0-1.local deleted:0 hits deleted:0 hits preparing ab-ini by André Machado
1
by Carson Holt-2
MAKER
Expose Command Line in Galaxy by Matthias Enders
13
by Matthias Enders
Galaxy Development
Conda problems: Failed to activate conda environment by Van Wageningen, GERH...
12
by Van Wageningen, GERH...
Galaxy Development
Inconsistencies on Template tags by Paulo Nuin
1
by Julie Sullivan-2
InterMine
AMD EPYC and Galaxy by Van Wageningen, GERH...
0
by Van Wageningen, GERH...
Galaxy Development
Error with SAMTools Mpileup v1.2 by Aarthi Mohan-2
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by Aarthi Mohan-2
Galaxy Development
uWSGI threading issue by Durdevic, Marija
0
by Durdevic, Marija
Galaxy Development
Inconsistencies on labelling by Paulo Nuin
3
by Julie Sullivan-2
InterMine
From Paste to uWSGI by Jochen Bick
3
by Jochen Bick
Galaxy Development
OBO files and annotation by Paulo Nuin
3
by Paulo Nuin
InterMine
Maker Error : Thread 1 terminated abnormally.. by André Machado
1
by Carson Holt-2
MAKER
map_forward=1 not mapping reference ID's to output correctly by kapeel
2
by Carson Holt-2
MAKER
How sensitive is MAKER to redundant/partial transcripts? by Lior Glick
1
by Carson Holt-2
MAKER
Genemark XXX.mod files by Jennifer Anderson
1
by Jason Stajich-4
MAKER
Database "Back to index" link is gone? by HongKee Moon
2
by HongKee Moon
InterMine
InterMine Developers Call - 5 July, Thursday 5 pm BST by Julie Sullivan-2
0
by Julie Sullivan-2
InterMine
Strange error in galaxy by Evan
0
by Evan
Galaxy Development
REST API api/tools by Dmitry
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by Dmitry
Galaxy Development
jobs not running with galaxy.yml by Matthias Bernt
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by Matthias Bernt
Galaxy Development
Unable to install tools from toolshed/mercurial issue in release_18.05 instance by Peter Briggs
2
by Peter Briggs
Galaxy Development
MySQL errors and warnings with a fresh install of Galaxy 18-05 by FredBGA
4
by FredBGA
Galaxy Development
Apollo 2.1.0 released / see you at Galaxy / BOSC 2018 by nathandunn
0
by nathandunn
Apollo
instance management inspiration by Matthias Bernt
3
by Björn Grüning-3
Galaxy Development
[biomart-users] Understand the percentage_gc_content by Yongchao Ge
4
by Ivan Molineris
BioMart User and Developer Support
[biomart-users] NA results when running getBM by Junehawk Lee
0
by Junehawk Lee
BioMart User and Developer Support
No InterMine call on Thursday 21 June by Julie Sullivan-2
0
by Julie Sullivan-2
InterMine
Best annotation set failure (auto_annotator.pm line 1774) by Greer Dolby
0
by Greer Dolby
MAKER
pbs/torque jobs by Briand, Sheldon (NRC...
10
by Marius van den Beek
Galaxy Development
Conflicting conda dependencies for Galaxy tool by Peter Briggs
0
by Peter Briggs
Galaxy Development
Filtering gene models based on eAED scores by Federico López
3
by Carson Holt-2
MAKER
python: error while loading shared libraries by Floreline TOUCHARD
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by Floreline TOUCHARD
Galaxy Development
job deletion by Matthias Bernt
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by Matthias Bernt
Galaxy Development
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