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Galaxy Development

This forum is an archive for the mailing list galaxy-dev@lists.bx.psu.edu (more options) Messages posted here will be sent to this mailing list.

This list is for discussion among developers and deployers of Galaxy, an analysis and data integration framework for biological data. Anyone running a local installation of Galaxy is also encouraged to join. Typical discussions regard features, bugs, and new ideas. Commits to the central source repository as well as announcements from the Galaxy Team are also sent to this list. Galaxy is a part of the Generic Model Organism Database (GMOD) project.

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Possible bug in managing tool shed repositories by Joachim Jacob | VIB ...

by Greg Von Kuster

Default history by Jordi Vaquero

by Jordi Vaquero

nglims roles by Lee Katz

by Lee Katz

Panels disappearing when choosing tools by Sebastian Schaaf

by Sebastian Schaaf

displaying further input based on previous input by vijayalakshmi-2

by vijayalakshmi-2

visulaization tool by shashi shekhar-2

by James Taylor-5

Startup error, Galaxy DB got corrupted? by Leon Mei

by Leon Mei

Messed up a tool installation from a local toolshed by Joachim Jacob | VIB ...

by Joachim Jacob | VIB ...

ProFTPD integration with Galaxy by Malcolm Tobias

by Malcolm Tobias

Cannot configure DRMAA by Viren Patel

by Carlos Borroto

Best practices for a local install of Galaxy by Paul St. Amand

by Paul St. Amand

Trying to configure external data source by Daniel Gorelik

by Daniel Gorelik

setting parameters for uploading a file for a java program by vijayalakshmi-2

by James Taylor-2

Clone Galaxy from repository: mercurial from behind proxy? by Sebastian Schaaf

by Sebastian Schaaf

Tophat2 output issue on LWR runner by Nikos Sidiropoulos

by John Chilton

Galaxy setup from cloudman shows no tools in the tool panel by Marco Ocana

by Dannon Baker-2

trimest tool cuts the begining of my seq names in the output fasta file by Inbar Plaschke

by Hans-Rudolf Hotz

Best practices for a local install of Galaxy for only 1 user on a Mac by Paul St. Amand

by Florent Angly

GATK fasta file not found ERROR by sridhar srinivasan

by sridhar srinivasan

dynamically load and run R scripts by Keilwagen, Jens

by fubar

The requested URL /cgi-bin-root/hgTracks was not found on this server by Rodolfo Aramayo

by Rodolfo Aramayo

invalid frame access with data source by Brian Craft

by Brian Craft

Cloudman - can you specify the volume size without needing to access the instance URL? by Ravpreet Setia

by Dannon Baker-2

bowtie2 on galaxy cloudman? by Murphy, Theresa

by Enis Afgan-2

Cloudman - Can you label volumes after user specifies the volume size they want? by Ravpreet Setia

by Enis Afgan-2

nglims/services/python by Lee Katz

by Lee Katz

problem integrating new jar file by vijayalakshmi

by Jeremy Goecks

transferring Trapnell et al programs into a one user instance of Galaxy by Elwood Linney

by Jeremy Goecks

wiki surge protection broken by Brian Craft

by Brian Craft

docs for data_source.py, file type handling, etc. by Brian Craft

by Brian Craft

Several jobs stalled in the queue: Job runner assigned but no external ID recorded by Derrick LIN

by Derrick LIN

printing output from java tool in the middle pane in galaxy by vijayalakshmi-2

by vijayalakshmi-2

How to speed up submissions of workflows by Anthonius deBoer

by Dannon Baker-2

formatting output from a java tool by vijayalakshmi-2

by vijayalakshmi-2

Messed up a tool installation from a local toolshed by Joachim Jacob-2

by Greg Von Kuster

Download histories by Doan, Ryan

by Jeremy Goecks

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