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Galaxy Help!!

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Galaxy Help!!

Robby Quinn
I am trying to use LEfSe but keep getting the same error. My data loads fine, but then I cannot get results from 'Plot LEfSe Results'. I then try to report the error, but it consistently tells me 'Mail is not configured for this Galaxy instance". So I don't think my error reports are working. Help Please!!!
0 bytes
An error occurred running this job:Traceback (most recent call last):
File "/usr/local/galaxy-dist/tools/lefse/plot_res.py", line 151, in <module>
else: plot_histo_hor(params['output_file'],params,data,len(data['cls']) == 2)
File "/usr/local/galaxy-dist/tools/lefse/plot_res.py", li

--
Robert Quinn, Ph.D
CFRI Postdoctoral Fellow
NLS 301, 5500 Campanile Dr, 
San Diego State University
San Diego, CA, 92182


___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
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Re: Galaxy Help!!

Jennifer Jackson
Hello Robby,

It sounds like you are using the Galaxy instance run by the Huttenhower
Lab at Harvard? At this link?
http://huttenhower.org/galaxy/

If so, then at the bottom of the home page is a link you can use to
contact the lab members about issues with the instance. (They probably
have the default "bug report" email turned off as a preference).

Hopefully this puts you in contact with the right folks who can help.

Some gentle advice - posting to two public mailing lists at the same
time is never a good idea. This was maybe in error? I removed
"[hidden email]" from the cc list.

Jen
Galaxy team

On 7/11/12 4:07 PM, Robby Quinn wrote:

> I am trying to use LEfSe but keep getting the same error. My data loads
> fine, but then I cannot get results from 'Plot LEfSe Results'. I then
> try to report the error, but it consistently tells me 'Mail is not
> configured for this Galaxy instance". So I don't think my error reports
> are working. Help Please!!!
> 0 bytes
> An error occurred running this job:/Traceback (most recent call last):
> File "/usr/local/galaxy-dist/tools/lefse/plot_res.py", line 151, in <module>
> else: plot_histo_hor(params['output_file'],params,data,len(data['cls'])
> == 2)
> File "/usr/local/galaxy-dist/tools/lefse/plot_res.py", li/
>
> --
> Robert Quinn, Ph.D
> CFRI Postdoctoral Fellow
> NLS 301, 5500 Campanile Dr,
> San Diego State University
> San Diego, CA, 92182
>
>
>
> ___________________________________________________________
> The Galaxy User list should be used for the discussion of
> Galaxy analysis and other features on the public server
> at usegalaxy.org.  Please keep all replies on the list by
> using "reply all" in your mail client.  For discussion of
> local Galaxy instances and the Galaxy source code, please
> use the Galaxy Development list:
>
>    http://lists.bx.psu.edu/listinfo/galaxy-dev
>
> To manage your subscriptions to this and other Galaxy lists,
> please use the interface at:
>
>    http://lists.bx.psu.edu/
>

--
Jennifer Jackson
http://galaxyproject.org


___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/
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