Galaxy

Galaxy Project

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.

Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

Note that the Galaxy-Users list is no longer active. It has been replaced by the Galaxy Biostar online forum.

Galaxy is a part of the Generic Model Organism Database (GMOD) project.



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Topics (9838)
Replies Last Post Views Sub Forum
Two questions: Daemon (no error code returned) and access configuration arguments by padioleau
1
by Nate Coraor (nate@bx...
Galaxy Development
Problem in uploading the DATA by asifullah khan
12
by Nate Coraor (nate@bx...
Galaxy Users
Re: [galaxy-user] why is ./tools/sr_mapping/bowtie_color_wrapper.xml not implemented by default? by Kelly Vincent-2
3
by Kelly Vincent-2
Galaxy Development
Unable to run previously working workflows by Manuel Leichsenring
1
by Dannon Baker
Galaxy Users
why is ./tools/sr_mapping/bowtie_color_wrapper.xml not implemented by default? by Kevin Lam
1
by Kelly Vincent-2
Galaxy Users
Dataset generation errors by Branden Timm
5
by Daniel Blankenberg
Galaxy Development
data upload via browser by Nguyen, Doan
0
by Nguyen, Doan
Galaxy Users
galaxy over LAN by TOLEN S
2
by Kevin Lam
Galaxy Users
search in libraries by Davide Cittaro
10
by Pieter Neerincx-3
Galaxy Users
Fwd: [galaxy-user] Tool Integration: SOAPaligner/soap2 by Kelly Vincent-2
0
by Kelly Vincent-2
Galaxy Development
Re: [galaxy-dev] Tool Integration: SOAPaligner/soap2 by Kelly Vincent-2
0
by Kelly Vincent-2
Galaxy Users
megablast options in galaxy by Ameena Nalim
0
by Ameena Nalim
Galaxy Users
Writing a tool, need wisdom on <output> by Reid, Robert
1
by James Taylor-2
Galaxy Development
Tool Integration: SOAPaligner/soap2 by Branden Timm
5
by Branden Timm
Galaxy Development
S.Cerevisiae Bowtie pre built index by SHAUN WEBB
3
by Jen Hillman-Jackson
Galaxy Development
Galaxy on python 2.7 ? by Assaf Gordon-2
2
by Enis Afgan-3
Galaxy Development
Tool Integration: SOAPaligner/soap2 by Branden Timm
0
by Branden Timm
Galaxy Development
Re: [galaxy-user] Static content fails to render by Nate Coraor (nate@bx...
0
by Nate Coraor (nate@bx...
Galaxy Development
Static content fails to render by Andrew Stewart
0
by Andrew Stewart
Galaxy Users
question about fastq groomer by kenlee nakasugi
1
by Jen Hillman-Jackson
Galaxy Users
XML/XSLT output in Galaxy by Jens Lichtenberg
1
by Jen Hillman-Jackson
Galaxy Development
minor bug: stderr is not "cloned" between histories. by Assaf Gordon-2
0
by Assaf Gordon-2
Galaxy Development
galaxy and mobyle xml wrappers by alex-20
1
by James Taylor-2
Galaxy Users
Embedabble workflows and automating execution by Alex Quezada-2
1
by Jen Hillman-Jackson
Galaxy Users
Non-admin users uploading from paths by Adam Labadorf
5
by Nate Coraor (nate@bx...
Galaxy Users
Server error from history view by simon andrews (BI)
9
by simon andrews (BI)
Galaxy Development
Getting genomes into a standalone galaxy instance by Will Dampier
1
by Brad Chapman
Galaxy Development
Passing a file and the contents in file.files_path by Roger Kapul
0
by Roger Kapul
Galaxy Development
Workflow not "flowing" by Marijn Vandevoorde
5
by Dannon Baker
Galaxy Development
Galaxy on Mac OS by sohkhan
2
by Jesse Erdmann
Galaxy Development
Downloading datasets by SHAUN WEBB
1
by Nate Coraor (nate@bx...
Galaxy Development
<filter> tag in output by Davide Cittaro
2
by Davide Cittaro
Galaxy Development
downloading screencasts? by Erick Antezana-2
1
by Jen Hillman-Jackson
Galaxy Users
display a bed with track definition line by Davide Cittaro
2
by Davide Cittaro
Galaxy Users
Mapping Unmapped sequences to other guessed contaminants by Antony Jose
2
by Jen Hillman-Jackson
Galaxy Users
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