Galaxy

Galaxy Project

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.

Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

Note that the Galaxy-Users list is no longer active. It has been replaced by the Galaxy Biostar online forum.

Galaxy is a part of the Generic Model Organism Database (GMOD) project.



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Topics (9803)
Replies Last Post Views Sub Forum
User file access without uploading? by Michael Siebauer
9
by Michael Siebauer
Galaxy Development
Samtools and BAM by Davide Cittaro
0
by Davide Cittaro
Galaxy Development
Workflow post-actions by Assaf Gordon-2
3
by Dennis Gascoigne-2
Galaxy Development
optional=true for param type=float by Michael Pheasant
0
by Michael Pheasant
Galaxy Development
History Import/Export by Assaf Gordon-2
5
by Dennis Gascoigne-2
Galaxy Development
minor error while upgrading database to version 50 by Assaf Gordon-2
3
by Enis Afgan-2
Galaxy Development
Bowtie with FASTA and Illumina FASTQ by Assaf Gordon-2
0
by Assaf Gordon-2
Galaxy Development
N-way splitter (poor man's parallelization) by Assaf Gordon-2
0
by Assaf Gordon-2
Galaxy Development
broken links in workflow by Michael Wilson-4
1
by Jeremy Goecks
Galaxy Development
Illumina srf format... by Davide Cittaro
0
by Davide Cittaro
Galaxy Development
Command tag in Galaxy by Sumedha Ganjoo
1
by Jesse Erdmann
Galaxy Development
New 5' start site, 3' end site and long internal coding exons by Yanwei Tan
3
by Jen Hillman-Jackson
Galaxy Users
Adding users under external authentication by Davide Cittaro
4
by Davide Cittaro
Galaxy Development
hesus RheMac2 genome by Lakshmanan Iyer
0
by Lakshmanan Iyer
Galaxy Users
Running workflows from the command line by Erick Antezana-2
1
by Nate Coraor (nate@bx...
Galaxy Users
error message printed unescaped into html stream - cant figure out what the error message is by Michael Pheasant
1
by Nate Coraor (nate@bx...
Galaxy Development
Admin/developer toolbar to speed up tool development. by Renaud Gaujoux
0
by Renaud Gaujoux
Galaxy Development
Galaxy on the cloud requests by Martin Paradesi
5
by Brad Chapman
Galaxy Development
get job update_time & update_time-create_time as label in history by Michael Pheasant
0
by Michael Pheasant
Galaxy Development
Developing Tools With Java by Elie Freilich
1
by Jesse Erdmann
Galaxy Development
Workflow Post Job Actions and Cleanup scripts by Dennis Gascoigne-2
1
by Dannon Baker
Galaxy Development
Error when dowloading large compressed data library by padioleau
2
by Nate Coraor (nate@bx...
Galaxy Development
is it possible to upload files to different local directories based on the galaxy upload.py script? by amenda lee
1
by Nate Coraor (nate@bx...
Galaxy Development
Cleaning Data Sets by Chris Zaleski
0
by Chris Zaleski
Galaxy Development
the display of bam files from galaxy behind apache is not working by Terrence Barrette
17
by Brad Chapman
Galaxy Development
Is it possible to upload different files to different directories by Galaxy upload.py script? by amenda lee
0
by amenda lee
Galaxy Users
June 21, 2010 Galaxy Development News Brief by Greg Von Kuster
4
by Kanwei Li
Galaxy Development
How do I contribute a bug-fix? by Pablo Cingolani
2
by Nate Coraor (nate@bx...
Galaxy Development
More flexible use of Sun Grid Engine by Galaxy by Peter van Heusden
2
by Nate Coraor (nate@bx...
Galaxy Development
query on upload files from file system path by Vipin TS
1
by Brad Chapman
Galaxy Development
problems with Explorer(6) on WinXP when looking at "Saved Histories" by Hans-Rudolf Hotz
1
by Kanwei Li
Galaxy Development
parallelizing an NGS mapping workflow by Chris Berthiaume
1
by Nate Coraor (nate@bx...
Galaxy Users
problems with install on OSX 10.5, Python 2.5.1 by Arlin Stoltzfus
1
by Nate Coraor (nate@bx...
Galaxy Development
NGS data library construction by Terrence Barrette
1
by Nate Coraor (nate@bx...
Galaxy Development
Lunch job as connected user by Mariette
1
by Nate Coraor (nate@bx...
Galaxy Development
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