[Gmod-ajax] Error while installing perl prerequisites for JBrowse

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[Gmod-ajax] Error while installing perl prerequisites for JBrowse

Pubudu Dodangoda
Hi,

I am getting the following errors when the ./setup.sh is run on my ubuntu machine. I followed instructions in http://gmod.org/wiki/JBrowse and https://github.com/GMOD/jbrowse/tree/master 

Attached is the setup.log file. Anyone who can support to troubleshoot this?

Thank you,
Pubudu

--
Pubudu Dodangoda
BSc Engineering(Hon's) Undergraduate
Department of Computer Science Engineering 
University of Moratuwa
0716053681 / 0717265234


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restrictions. Mobile Device Manager Plus allows you to control only the
apps on BYO-devices by containerizing them, leaving personal data untouched!
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Re: Error while installing perl prerequisites for JBrowse

nathandunn

Pubudu,

If you look at the last line in the setup line you’ll have to change the permissions on the .cpanm file as Ian suggested:

+ bin/cpanm -v -l extlib Bio::DB::Sam@1.41
Can't write to cpanm home '/home/pubudud/.cpanm': You should fix it with chown/chmod first.


You can find out where its using:

which cpanm

and then you would do some command such as:

chown pubudu:pubudu ~/.cpanm 

to set ownership (or chmod to set the proper permissions).   More info on-line and on the web:


Nathan Dunn, PhD
Berkeley Bioinformatics Open-source Projects (BBOP)
Genomics Division, Lawrence Berkeley National Laboratory
[hidden email]


On Apr 30, 2016, at 11:47 PM, Pubudu Dodangoda <[hidden email]> wrote:

Hi,

I am getting the following errors when the ./setup.sh is run on my ubuntu machine. I followed instructions in http://gmod.org/wiki/JBrowse and https://github.com/GMOD/jbrowse/tree/master 

Attached is the setup.log file. Anyone who can support to troubleshoot this?

Thank you,
Pubudu

--
Pubudu Dodangoda
BSc Engineering(Hon's) Undergraduate
Department of Computer Science Engineering 
University of Moratuwa
0716053681 / 0717265234

<setup.log>------------------------------------------------------------------------------
Mobile security can be enabling, not merely restricting. Employees who
bring their own devices (BYOD) to work are irked by the imposition of MDM
restrictions. Mobile Device Manager Plus allows you to control only the
apps on BYO-devices by containerizing them, leaving personal data untouched!
https://ad.doubleclick.net/ddm/clk/304595813;131938128;j_______________________________________________
Gmod-ajax mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-ajax


------------------------------------------------------------------------------
Mobile security can be enabling, not merely restricting. Employees who
bring their own devices (BYOD) to work are irked by the imposition of MDM
restrictions. Mobile Device Manager Plus allows you to control only the
apps on BYO-devices by containerizing them, leaving personal data untouched!
https://ad.doubleclick.net/ddm/clk/304595813;131938128;j
_______________________________________________
Gmod-ajax mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-ajax