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[Gmod-ajax] Formatting feature tracks: Is there an equivalent to gbrowse's sort-order function?

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AWilkey

[Gmod-ajax] Formatting feature tracks: Is there an equivalent to gbrowse's sort-order function?

I have been working on formatting a hackish synteny track for a project, and have gotten into a position where it would be nice to be able to group the display by name, similar to gbrowse's sort-order: name configuration option. Is there currently any way to manipulate the feature tracks so features are sorted in any way other than by the default of left coordinate?

Thank you,

Andrew Wilkey

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Colin

Re: Formatting feature tracks: Is there an equivalent to gbrowse's sort-order function?

Can you clarify this at all? I'm not sure how the sort-order relates to the way that features are sorted by coordinates

-Colin

On Thu, Jun 12, 2014 at 10:25 AM, Andrew Wilkey <[hidden email]> wrote:

I have been working on formatting a hackish synteny track for a project, and have gotten into a position where it would be nice to be able to group the display by name, similar to gbrowse's sort-order: name configuration option. Is there currently any way to manipulate the feature tracks so features are sorted in any way other than by the default of left coordinate?

Thank you,

Andrew Wilkey

------------------------------------------------------------------------------
HPCC Systems Open Source Big Data Platform from LexisNexis Risk Solutions
Find What Matters Most in Your Big Data with HPCC Systems
Open Source. Fast. Scalable. Simple. Ideal for Dirty Data.
Leverages Graph Analysis for Fast Processing & Easy Data Exploration
http://p.sf.net/sfu/hpccsystems
_______________________________________________
Gmod-ajax mailing list
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AWilkey

Re: Formatting feature tracks: Is there an equivalent to gbrowse's sort-order function?

Looking at the request again, I realized I had made a mistake reading over the gbrowse configuration we were using and this question is now completely irrelevant to the problem at hand.

The question that should have been asked is: "Is it possible to allow mouse selection of the individual ProcessedTranscript glyphs that make up the Gene glyph?"

On Sat, Jun 14, 2014 at 7:33 PM, Colin <[hidden email]> wrote:

Can you clarify this at all? I'm not sure how the sort-order relates to the way that features are sorted by coordinates

-Colin

On Thu, Jun 12, 2014 at 10:25 AM, Andrew Wilkey <[hidden email]> wrote:

I have been working on formatting a hackish synteny track for a project, and have gotten into a position where it would be nice to be able to group the display by name, similar to gbrowse's sort-order: name configuration option. Is there currently any way to manipulate the feature tracks so features are sorted in any way other than by the default of left coordinate?

Thank you,

Andrew Wilkey

------------------------------------------------------------------------------
HPCC Systems Open Source Big Data Platform from LexisNexis Risk Solutions
Find What Matters Most in Your Big Data with HPCC Systems
Open Source. Fast. Scalable. Simple. Ideal for Dirty Data.
Leverages Graph Analysis for Fast Processing & Easy Data Exploration
http://p.sf.net/sfu/hpccsystems
_______________________________________________
Gmod-ajax mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-ajax

Colin

Re: Formatting feature tracks: Is there an equivalent to gbrowse's sort-order function?

I think you can only select the gene given this circumstance. If you want to select only the subfeatures, you could specify to only load them (i.e. set --type mRNA when using flatfile-to-json for example) but i'm not sure if this is what you're looking for.

-Colin

On Mon, Jun 16, 2014 at 8:46 AM, Andrew Wilkey <[hidden email]> wrote:

Looking at the request again, I realized I had made a mistake reading over the gbrowse configuration we were using and this question is now completely irrelevant to the problem at hand.

The question that should have been asked is: "Is it possible to allow mouse selection of the individual ProcessedTranscript glyphs that make up the Gene glyph?"

On Sat, Jun 14, 2014 at 7:33 PM, Colin <[hidden email]> wrote:

Can you clarify this at all? I'm not sure how the sort-order relates to the way that features are sorted by coordinates

-Colin

On Thu, Jun 12, 2014 at 10:25 AM, Andrew Wilkey <[hidden email]> wrote:

I have been working on formatting a hackish synteny track for a project, and have gotten into a position where it would be nice to be able to group the display by name, similar to gbrowse's sort-order: name configuration option. Is there currently any way to manipulate the feature tracks so features are sorted in any way other than by the default of left coordinate?

Thank you,

Andrew Wilkey

------------------------------------------------------------------------------
HPCC Systems Open Source Big Data Platform from LexisNexis Risk Solutions
Find What Matters Most in Your Big Data with HPCC Systems
Open Source. Fast. Scalable. Simple. Ideal for Dirty Data.
Leverages Graph Analysis for Fast Processing & Easy Data Exploration
http://p.sf.net/sfu/hpccsystems
_______________________________________________
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