[Gmod-ajax] JBrowse 1.9.2 released

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[Gmod-ajax] JBrowse 1.9.2 released

Robert Buels-2
Hi all,

JBrowse 1.9.2 has been released, with fixes for a number of smaller
issues present in the 1.9.1 release.

It can be downloaded from http://jbrowse.org/jbrowse-1-9-2

Changes in this release:

  * Fixed bug in which JBrowse could not properly display all data in
    BAM files with reference sequence name sections bigger than 64KB.
    Thanks to GitHub user lfgu for pointing this out (issue #245).

  * Made REST feature store backend less sensitive more tolerant of
    stringification of `start`, `end`, `strand`, and `score` in feature
    JSON.  Thanks to Matt Bomhoff for pointing this out.

  * Fixed bug in which URLs for plugin resources were not assembled
    relative to the `browserRoot` config variable.  Thanks to Matt
    Bomhoff for pointing this out.

  * Fixed bug in which missing fields in a VCF variant's genotype
    prevented display of a variant's details.  Thanks to Jillian Rowe
    for pointing this out.

  * Fixed some minor issues related to the handling of empty BigWig
    files.  Thanks to Nathan Boley for pointing this out (issue #252).

  * The `trackSelector.type` global config variable can now contain
    fully-qualified class names, so plugins can contain their own
    tracklist classes.  Thanks to Matt Bomhoff for pointing this out.

  * Moved the "Select tracks" tab used to open the faceted track
    selector downward, so that it does not block access to the left
    side of the reference sequence overview.


Happy browsing.  ;-)

Robert Buels
Lead Developer
JBrowse - http://jbrowse.org


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Re: JBrowse 1.9.2 released

Lincoln Stein
Great work!

Lincoln

On Thursday, May 2, 2013, Robert Buels wrote:
Hi all,

JBrowse 1.9.2 has been released, with fixes for a number of smaller issues present in the 1.9.1 release.

It can be downloaded from http://jbrowse.org/jbrowse-1-9-2

Changes in this release:

 * Fixed bug in which JBrowse could not properly display all data in
   BAM files with reference sequence name sections bigger than 64KB.
   Thanks to GitHub user lfgu for pointing this out (issue #245).

 * Made REST feature store backend less sensitive more tolerant of
   stringification of `start`, `end`, `strand`, and `score` in feature
   JSON.  Thanks to Matt Bomhoff for pointing this out.

 * Fixed bug in which URLs for plugin resources were not assembled
   relative to the `browserRoot` config variable.  Thanks to Matt
   Bomhoff for pointing this out.

 * Fixed bug in which missing fields in a VCF variant's genotype
   prevented display of a variant's details.  Thanks to Jillian Rowe
   for pointing this out.

 * Fixed some minor issues related to the handling of empty BigWig
   files.  Thanks to Nathan Boley for pointing this out (issue #252).

 * The `trackSelector.type` global config variable can now contain
   fully-qualified class names, so plugins can contain their own
   tracklist classes.  Thanks to Matt Bomhoff for pointing this out.

 * Moved the "Select tracks" tab used to open the faceted track
   selector downward, so that it does not block access to the left
   side of the reference sequence overview.


Happy browsing.  ;-)

Robert Buels
Lead Developer
JBrowse - http://jbrowse.org




--
Lincoln D. Stein
Director, Informatics and Biocomputing Platform
Ontario Institute for Cancer Research
101 College St., Suite 800
Toronto, ON, Canada M5G0A3
416 673-8514
Assistant: Renata Musa <[hidden email]>

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Re: JBrowse 1.9.2 released

Jillian Rowe
In reply to this post by Robert Buels-2
Thanks! Works great with the VCF files.
________________________________________
From: Robert Buels [[hidden email]]
Sent: Thursday, May 02, 2013 8:47 PM
To: [hidden email]; [hidden email]
Subject: [Gmod-ajax] JBrowse 1.9.2 released

Hi all,

JBrowse 1.9.2 has been released, with fixes for a number of smaller
issues present in the 1.9.1 release.

It can be downloaded from http://jbrowse.org/jbrowse-1-9-2

Changes in this release:

  * Fixed bug in which JBrowse could not properly display all data in
    BAM files with reference sequence name sections bigger than 64KB.
    Thanks to GitHub user lfgu for pointing this out (issue #245).

  * Made REST feature store backend less sensitive more tolerant of
    stringification of `start`, `end`, `strand`, and `score` in feature
    JSON.  Thanks to Matt Bomhoff for pointing this out.

  * Fixed bug in which URLs for plugin resources were not assembled
    relative to the `browserRoot` config variable.  Thanks to Matt
    Bomhoff for pointing this out.

  * Fixed bug in which missing fields in a VCF variant's genotype
    prevented display of a variant's details.  Thanks to Jillian Rowe
    for pointing this out.

  * Fixed some minor issues related to the handling of empty BigWig
    files.  Thanks to Nathan Boley for pointing this out (issue #252).

  * The `trackSelector.type` global config variable can now contain
    fully-qualified class names, so plugins can contain their own
    tracklist classes.  Thanks to Matt Bomhoff for pointing this out.

  * Moved the "Select tracks" tab used to open the faceted track
    selector downward, so that it does not block access to the left
    side of the reference sequence overview.


Happy browsing.  ;-)

Robert Buels
Lead Developer
JBrowse - http://jbrowse.org


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Get 100% visibility into your production application - at no cost.
Code-level diagnostics for performance bottlenecks with <2% overhead
Download for free and get started troubleshooting in minutes.
http://p.sf.net/sfu/appdyn_d2d_ap1
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