[Gmod-ajax] JBrowse: changing index.html combined with dataset selector

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[Gmod-ajax] JBrowse: changing index.html combined with dataset selector

Nadine Elpida Tatto
Hi there,

I've changed the index.html of Jbrowse to add some additional information  and logos etc

Additionally I am using different datasets and the dataset selector.

Now - when I change the dataset - the logos and information isn't shown anymore. 

What can I do to keep this displayed?

I am using JBrowse 1.11.6

Thank you in advance
Best Regards
Nadine

----------------------------------------
DI(FH) Nadine Tatto
Bioinformatics

ACIB - Austrian Centre of Industrial Biotechnology
----------------------------------------
Tel: +43 1 47654 6838
Fax: +43 1 36006 6847
Email: [hidden email]
Web: www.acib.at
Office: Muthgasse 18, 1190 Wien
----------------------------------------
ACIB GmbH, Petersgasse 14, 8010 Graz, Austria
FB: 224687y FBG: HG Graz UID: ATU 54545504
---------------------------------------



------------------------------------------------------------------------------
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Widest out-of-the-box monitoring support with 50+ applications
Performance metrics, stats and reports that give you Actionable Insights
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Re: JBrowse: changing index.html combined with dataset selector

Eric Yao
Hi Nadine,
Does it work with the sample datasets?

Eric Yao
UC Berkeley

On Mon, May 11, 2015 at 4:52 AM, Nadine Elpida Tatto <[hidden email]> wrote:
Hi there,

I've changed the index.html of Jbrowse to add some additional information  and logos etc

Additionally I am using different datasets and the dataset selector.

Now - when I change the dataset - the logos and information isn't shown anymore. 

What can I do to keep this displayed?

I am using JBrowse 1.11.6

Thank you in advance
Best Regards
Nadine

----------------------------------------
DI(FH) Nadine Tatto
Bioinformatics

ACIB - Austrian Centre of Industrial Biotechnology
----------------------------------------
Tel: <a href="tel:%2B43%201%2047654%206838" value="+431476546838" target="_blank">+43 1 47654 6838
Fax: <a href="tel:%2B43%201%2036006%206847" value="+431360066847" target="_blank">+43 1 36006 6847
Email: [hidden email]
Web: www.acib.at
Office: Muthgasse 18, 1190 Wien
----------------------------------------
ACIB GmbH, Petersgasse 14, 8010 Graz, Austria
FB: 224687y FBG: HG Graz UID: ATU 54545504
---------------------------------------



------------------------------------------------------------------------------
One dashboard for servers and applications across Physical-Virtual-Cloud
Widest out-of-the-box monitoring support with 50+ applications
Performance metrics, stats and reports that give you Actionable Insights
Deep dive visibility with transaction tracing using APM Insight.
http://ad.doubleclick.net/ddm/clk/290420510;117567292;y
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------------------------------------------------------------------------------
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Widest out-of-the-box monitoring support with 50+ applications
Performance metrics, stats and reports that give you Actionable Insights
Deep dive visibility with transaction tracing using APM Insight.
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Re: JBrowse: changing index.html combined with dataset selector

Nadine Elpida Tatto
Hi Eric,
yes - there it works fine. Additionally I found out, that my changes appear after dataset change and another following page refresh. Maybe it has something to do with caching?

And now I have another problem: I point a URL to the new jbrowse instance with the changed index html. And when I load it the first time I only see my changes and instead of jbrowse and the dataselector just three links (according to the three datasets). I've attached a screenshot. The URL is pichiagenome.org.

After clicking one of those links everything seems to be fine again and jbrowse is displayed.

Do you have any idea what the reason might be for this?

Thank you
Nadine



----------------------------------------
DI(FH) Nadine Tatto
Bioinformatics

ACIB - Austrian Centre of Industrial Biotechnology
----------------------------------------
Tel: +43 1 47654 6838
Fax: +43 1 36006 6847
Email: [hidden email]
Web: www.acib.at
Office: Muthgasse 18, 1190 Wien
----------------------------------------
ACIB GmbH, Petersgasse 14, 8010 Graz, Austria
FB: 224687y FBG: HG Graz UID: ATU 54545504
---------------------------------------


>>> Eric Yao <[hidden email]> 05/11/15 7:23 PM >>>
Hi Nadine,
Does it work with the sample datasets?

Eric Yao
UC Berkeley

On Mon, May 11, 2015 at 4:52 AM, Nadine Elpida Tatto <[hidden email]> wrote:
Hi there,

I've changed the index.html of Jbrowse to add some additional information  and logos etc

Additionally I am using different datasets and the dataset selector.

Now - when I change the dataset - the logos and information isn't shown anymore. 

What can I do to keep this displayed?

I am using JBrowse 1.11.6

Thank you in advance
Best Regards
Nadine

----------------------------------------
DI(FH) Nadine Tatto
Bioinformatics

ACIB - Austrian Centre of Industrial Biotechnology
----------------------------------------
Tel: <a href="tel:%2B43%201%2047654%206838" value="+431476546838" target="_blank">+43 1 47654 6838
Fax: <a href="tel:%2B43%201%2036006%206847" value="+431360066847" target="_blank">+43 1 36006 6847
Email: [hidden email]
Web: www.acib.at
Office: Muthgasse 18, 1190 Wien
----------------------------------------
ACIB GmbH, Petersgasse 14, 8010 Graz, Austria
FB: 224687y FBG: HG Graz UID: ATU 54545504
---------------------------------------



------------------------------------------------------------------------------
One dashboard for servers and applications across Physical-Virtual-Cloud
Widest out-of-the-box monitoring support with 50+ applications
Performance metrics, stats and reports that give you Actionable Insights
Deep dive visibility with transaction tracing using APM Insight.
http://ad.doubleclick.net/ddm/clk/290420510;117567292;y
_______________________________________________
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[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-ajax



------------------------------------------------------------------------------
One dashboard for servers and applications across Physical-Virtual-Cloud
Widest out-of-the-box monitoring support with 50+ applications
Performance metrics, stats and reports that give you Actionable Insights
Deep dive visibility with transaction tracing using APM Insight.
http://ad.doubleclick.net/ddm/clk/290420510;117567292;y
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Bildschirmfoto vom 2015-05-12 10:31:26.png (116K) Download Attachment
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Re: JBrowse: changing index.html combined with dataset selector

Nadine Elpida Tatto
In reply to this post by Eric Yao
What I forgot to mention in my last mail is, that the loading problem from my first mail doesn't seem to exist on my productive server (where the URL points to), at least after selecting one of the links I talked about in my last mail.
Best Regards
Nadine



----------------------------------------
DI(FH) Nadine Tatto
Bioinformatics

ACIB - Austrian Centre of Industrial Biotechnology
----------------------------------------
Tel: +43 1 47654 6838
Fax: +43 1 36006 6847
Email: [hidden email]
Web: www.acib.at
Office: Muthgasse 18, 1190 Wien
----------------------------------------
ACIB GmbH, Petersgasse 14, 8010 Graz, Austria
FB: 224687y FBG: HG Graz UID: ATU 54545504
---------------------------------------


>>> Eric Yao <[hidden email]> 05/11/15 7:23 PM >>>
Hi Nadine,
Does it work with the sample datasets?

Eric Yao
UC Berkeley

On Mon, May 11, 2015 at 4:52 AM, Nadine Elpida Tatto <[hidden email]> wrote:
Hi there,

I've changed the index.html of Jbrowse to add some additional information  and logos etc

Additionally I am using different datasets and the dataset selector.

Now - when I change the dataset - the logos and information isn't shown anymore. 

What can I do to keep this displayed?

I am using JBrowse 1.11.6

Thank you in advance
Best Regards
Nadine

----------------------------------------
DI(FH) Nadine Tatto
Bioinformatics

ACIB - Austrian Centre of Industrial Biotechnology
----------------------------------------
Tel: <a href="tel:%2B43%201%2047654%206838" value="+431476546838" target="_blank">+43 1 47654 6838
Fax: <a href="tel:%2B43%201%2036006%206847" value="+431360066847" target="_blank">+43 1 36006 6847
Email: [hidden email]
Web: www.acib.at
Office: Muthgasse 18, 1190 Wien
----------------------------------------
ACIB GmbH, Petersgasse 14, 8010 Graz, Austria
FB: 224687y FBG: HG Graz UID: ATU 54545504
---------------------------------------



------------------------------------------------------------------------------
One dashboard for servers and applications across Physical-Virtual-Cloud
Widest out-of-the-box monitoring support with 50+ applications
Performance metrics, stats and reports that give you Actionable Insights
Deep dive visibility with transaction tracing using APM Insight.
http://ad.doubleclick.net/ddm/clk/290420510;117567292;y
_______________________________________________
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[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-ajax



------------------------------------------------------------------------------
One dashboard for servers and applications across Physical-Virtual-Cloud
Widest out-of-the-box monitoring support with 50+ applications
Performance metrics, stats and reports that give you Actionable Insights
Deep dive visibility with transaction tracing using APM Insight.
http://ad.doubleclick.net/ddm/clk/290420510;117567292;y
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Re: JBrowse: changing index.html combined with dataset selector

Nadine Elpida Tatto
In reply to this post by Eric Yao
Hi Eric,
I think I've found a solution for the first-load-links-problem.
I created links to the files and folders of one of the datasets directly in the data folder and now I get a jbrowse displayed right away.

Still I don't know why the loading of the adapted index.html isn't working on my development server at dataset change, but this doesn't matter as long as it works on the production server. 

However - thank you for your help.

Best Regards,

Nadine



----------------------------------------
DI(FH) Nadine Tatto
Bioinformatics

ACIB - Austrian Centre of Industrial Biotechnology
----------------------------------------
Tel: +43 1 47654 6838
Fax: +43 1 36006 6847
Email: [hidden email]
Web: www.acib.at
Office: Muthgasse 18, 1190 Wien
----------------------------------------
ACIB GmbH, Petersgasse 14, 8010 Graz, Austria
FB: 224687y FBG: HG Graz UID: ATU 54545504
---------------------------------------


>>> Eric Yao <[hidden email]> 05/11/15 7:23 PM >>>
Hi Nadine,
Does it work with the sample datasets?

Eric Yao
UC Berkeley

On Mon, May 11, 2015 at 4:52 AM, Nadine Elpida Tatto <[hidden email]> wrote:
Hi there,

I've changed the index.html of Jbrowse to add some additional information  and logos etc

Additionally I am using different datasets and the dataset selector.

Now - when I change the dataset - the logos and information isn't shown anymore. 

What can I do to keep this displayed?

I am using JBrowse 1.11.6

Thank you in advance
Best Regards
Nadine

----------------------------------------
DI(FH) Nadine Tatto
Bioinformatics

ACIB - Austrian Centre of Industrial Biotechnology
----------------------------------------
Tel: <a href="tel:%2B43%201%2047654%206838" value="+431476546838" target="_blank">+43 1 47654 6838
Fax: <a href="tel:%2B43%201%2036006%206847" value="+431360066847" target="_blank">+43 1 36006 6847
Email: [hidden email]
Web: www.acib.at
Office: Muthgasse 18, 1190 Wien
----------------------------------------
ACIB GmbH, Petersgasse 14, 8010 Graz, Austria
FB: 224687y FBG: HG Graz UID: ATU 54545504
---------------------------------------



------------------------------------------------------------------------------
One dashboard for servers and applications across Physical-Virtual-Cloud
Widest out-of-the-box monitoring support with 50+ applications
Performance metrics, stats and reports that give you Actionable Insights
Deep dive visibility with transaction tracing using APM Insight.
http://ad.doubleclick.net/ddm/clk/290420510;117567292;y
_______________________________________________
Gmod-ajax mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-ajax



------------------------------------------------------------------------------
One dashboard for servers and applications across Physical-Virtual-Cloud
Widest out-of-the-box monitoring support with 50+ applications
Performance metrics, stats and reports that give you Actionable Insights
Deep dive visibility with transaction tracing using APM Insight.
http://ad.doubleclick.net/ddm/clk/290420510;117567292;y
_______________________________________________
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