[Gmod-ajax] JBrowse flatfiles off-by-one bug

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[Gmod-ajax] JBrowse flatfiles off-by-one bug

Gregg Helt
As near as I can tell (by checking for splice site GT/AG consensus) all of the subfeatures in JSON data files being generated from BED files via flatfile-to-json.pl have both their start and end properties offset by -1 from what they should be.  This doesn't appear to be a new bug -- I've checked both the current version of JBrowse and a version from last July, and it has this bug too.

Gregg


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What You Don't Know About Data Connectivity CAN Hurt You
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Re: [apollo-dev] JBrowse flatfiles off-by-one bug

Mitch Skinner
Bleh, should be fixed now in HEAD.  Thanks for the report.

Mitch

On 03/08/2011 06:29 AM, Gregg Helt wrote:
As near as I can tell (by checking for splice site GT/AG consensus) all of the subfeatures in JSON data files being generated from BED files via flatfile-to-json.pl have both their start and end properties offset by -1 from what they should be.  This doesn't appear to be a new bug -- I've checked both the current version of JBrowse and a version from last July, and it has this bug too.

Gregg



------------------------------------------------------------------------------
What You Don't Know About Data Connectivity CAN Hurt You
This paper provides an overview of data connectivity, details
its effect on application quality, and explores various alternative
solutions. http://p.sf.net/sfu/progress-d2d
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