[Gmod-ajax] Problem Installing Jbrowse

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[Gmod-ajax] Problem Installing Jbrowse

Li, Rui
Dear Jbrowse developers,

I have followed the GMOD instructions, but encountered problems in installing Jbrowse in Ubuntu 12.04 system.
Can you show me how to solve the problem?

Thanks!

Rui 

-- 
Rui Li 
PhD candidate
Dr. Zhihua Jiang Lab
Animal Sciences Department
Washington State University


------------------------------------------------------------------------------
Mobile security can be enabling, not merely restricting. Employees who
bring their own devices (BYOD) to work are irked by the imposition of MDM
restrictions. Mobile Device Manager Plus allows you to control only the
apps on BYO-devices by containerizing them, leaving personal data untouched!
https://ad.doubleclick.net/ddm/clk/304595813;131938128;j
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setup.log (61K) Download Attachment
ATT00001.htm (1K) Download Attachment
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Re: Problem Installing Jbrowse

nathandunn

If you look at the end of your setup.log file, it looks like you need to install samtools.  


Nathan

On May 22, 2016, at 10:22 PM, Li, Rui <[hidden email]> wrote:

Dear Jbrowse developers,

I have followed the GMOD instructions, but encountered problems in installing Jbrowse in Ubuntu 12.04 system.
Can you show me how to solve the problem?

Thanks!

Rui 

-- 
Rui Li 
PhD candidate
Dr. Zhihua Jiang Lab
Animal Sciences Department
Washington State University

<setup.log>




------------------------------------------------------------------------------
Mobile security can be enabling, not merely restricting. Employees who
bring their own devices (BYOD) to work are irked by the imposition of MDM
restrictions. Mobile Device Manager Plus allows you to control only the
apps on BYO-devices by containerizing them, leaving personal data untouched!
https://ad.doubleclick.net/ddm/clk/304595813;131938128;j_______________________________________________
Gmod-ajax mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-ajax


------------------------------------------------------------------------------
Mobile security can be enabling, not merely restricting. Employees who
bring their own devices (BYOD) to work are irked by the imposition of MDM
restrictions. Mobile Device Manager Plus allows you to control only the
apps on BYO-devices by containerizing them, leaving personal data untouched!
https://ad.doubleclick.net/ddm/clk/304595813;131938128;j
_______________________________________________
Gmod-ajax mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-ajax
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Re: Problem Installing Jbrowse

Scott Cain
But you don't really need samtools to make JBrowse work--BAM files are rendered in-browser now, so if the only problem is that the bam-to-json script won't work, it isn't really a problem at all.  Rui, if that's the only problem, ignore it and try browsing the sample data.

Scott


On Tue, May 24, 2016 at 5:28 PM, Nathan Dunn <[hidden email]> wrote:

If you look at the end of your setup.log file, it looks like you need to install samtools.  


Nathan

On May 22, 2016, at 10:22 PM, Li, Rui <[hidden email]> wrote:

Dear Jbrowse developers,

I have followed the GMOD instructions, but encountered problems in installing Jbrowse in Ubuntu 12.04 system.
Can you show me how to solve the problem?

Thanks!

Rui 

-- 
Rui Li 
PhD candidate
Dr. Zhihua Jiang Lab
Animal Sciences Department
Washington State University

<setup.log>




------------------------------------------------------------------------------
Mobile security can be enabling, not merely restricting. Employees who
bring their own devices (BYOD) to work are irked by the imposition of MDM
restrictions. Mobile Device Manager Plus allows you to control only the
apps on BYO-devices by containerizing them, leaving personal data untouched!
https://ad.doubleclick.net/ddm/clk/304595813;131938128;j_______________________________________________
Gmod-ajax mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-ajax


------------------------------------------------------------------------------
Mobile security can be enabling, not merely restricting. Employees who
bring their own devices (BYOD) to work are irked by the imposition of MDM
restrictions. Mobile Device Manager Plus allows you to control only the
apps on BYO-devices by containerizing them, leaving personal data untouched!
https://ad.doubleclick.net/ddm/clk/304595813;131938128;j
_______________________________________________
Gmod-ajax mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-ajax




--
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

------------------------------------------------------------------------------
Mobile security can be enabling, not merely restricting. Employees who
bring their own devices (BYOD) to work are irked by the imposition of MDM
restrictions. Mobile Device Manager Plus allows you to control only the
apps on BYO-devices by containerizing them, leaving personal data untouched!
https://ad.doubleclick.net/ddm/clk/304595813;131938128;j
_______________________________________________
Gmod-ajax mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-ajax