Hello, Is there a way to change the histogram color of the SNP coverage. For example this gray color is not prominent when i try to use this kind of image for a publication. If I want to change it to purple, can i do that ? Thank you Chathura ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, SlashDot.org! http://sdm.link/slashdot _______________________________________________ Gmod-ajax mailing list [hidden email] https://lists.sourceforge.net/lists/listinfo/gmod-ajax |
Isn't this the point of SNP coverage track type: to highlight SNPs with colors but fade others in grey coverage? If you'd like to make publication quality plots for coverage, I suggest you to use the "coverage" track or custom coverage track from BigWig files. KeOn Mon, Jan 16, 2017 at 11:01 PM, Chathura Gunasekara <[hidden email]> wrote:
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In reply to this post by Chathura Gunasekara
Hi Chathura,
Not sure if this is exactly what you need, but take a look at the plugin proportialmultibw: ![]() Keiran Raine Principal Bioinformatician Cancer Genome Project Wellcome Trust Sanger Institute Tel:+44 (0)1223 834244 Ext: 4983 Office: H104
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It is sort of a "hidden setting", but you can actually change colors on the SNPCoverage track using CSS See css/sequence.css: /* colors for bases must be specified as hex or rgb/hsl strings, no named colors such as 'red' */ .base_n { background-color: #C6C6C6; } .base_a { background-color: #00BF00; } .base_c { background-color: #4747ff; } .base_t { background-color: #f00; } .base_g { background-color: #d5bb04; } .base_reference { background-color: #a33; } .base_deletion { background-color: #999; } .sequence.nocolor .base { background-color: #ddd; } If you change those, it will be reflected in your SNPCoverage track. The .base_reference is the background grey of the SNPCoverage plot, and if you actually add to the list and make .base_skip you can make the intron grey change color. -Colin On Tue, Jan 17, 2017 at 9:11 AM, Keiran Raine <[hidden email]> wrote:
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Thanks Colin, This is exactly what I wanted. And Thanks to Keiran Too. I learned something new On Tue, Jan 17, 2017 at 9:38 AM, Colin <[hidden email]> wrote:
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