[Gmod-ajax] displaying VCF attributes

classic Classic list List threaded Threaded
2 messages Options
Reply | Threaded
Open this post in threaded view
|

[Gmod-ajax] displaying VCF attributes

Naama Menda
is there a way of turning off printing of the SNP attributes in the pop-up window (the 8th "info" column from the VCF file) without deleting that column content from the original files ?

Thanks!
-Naama




Naama Menda
Boyce Thompson Institute for Plant Research
Tower Rd
Ithaca NY 14853
USA

(607) 254 3569
Sol Genomics Network
http://solgenomics.net/
[hidden email]


------------------------------------------------------------------------------
Open source business process management suite built on Java and Eclipse
Turn processes into business applications with Bonita BPM Community Edition
Quickly connect people, data, and systems into organized workflows
Winner of BOSSIE, CODIE, OW2 and Gartner awards
http://p.sf.net/sfu/Bonitasoft
_______________________________________________
Gmod-ajax mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-ajax
Reply | Threaded
Open this post in threaded view
|

Re: displaying VCF attributes

Colin
Hi Naama,
I think that there is not an ideal way to do this yet. You can use callbacks to customize the content of the individual fields in the "view details" popups since jbrowse version 1.11.3 (http://gmod.org/wiki/JBrowse_Configuration_Guide#Customizing_parts_of_the_.27View_details.27_Pop-ups_with_callbacks) but unfortunately we haven't enabled functionality to let the user to remove (or add)  fields in the popups easily. I think this is a good idea though.

Thanks
-Colin


On Mon, Jul 7, 2014 at 11:03 AM, Naama Menda <[hidden email]> wrote:
is there a way of turning off printing of the SNP attributes in the pop-up window (the 8th "info" column from the VCF file) without deleting that column content from the original files ?

Thanks!
-Naama




Naama Menda
Boyce Thompson Institute for Plant Research
Tower Rd
Ithaca NY 14853
USA

<a href="tel:%28607%29%20254%203569" value="+16072543569" target="_blank">(607) 254 3569
Sol Genomics Network
http://solgenomics.net/
[hidden email]


------------------------------------------------------------------------------
Open source business process management suite built on Java and Eclipse
Turn processes into business applications with Bonita BPM Community Edition
Quickly connect people, data, and systems into organized workflows
Winner of BOSSIE, CODIE, OW2 and Gartner awards
http://p.sf.net/sfu/Bonitasoft
_______________________________________________
Gmod-ajax mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-ajax



------------------------------------------------------------------------------
Open source business process management suite built on Java and Eclipse
Turn processes into business applications with Bonita BPM Community Edition
Quickly connect people, data, and systems into organized workflows
Winner of BOSSIE, CODIE, OW2 and Gartner awards
http://p.sf.net/sfu/Bonitasoft
_______________________________________________
Gmod-ajax mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-ajax