[Gmod-ajax] stacked tracks

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[Gmod-ajax] stacked tracks

dmgood11
I was curious if anyone had made any progress implementing subtracks / stacked tracks, analogous to the multiz alignment and conservation tracks in the UCSC genome browser, e.g., : 


or perhaps a custom glyph that accomplishes a similar visual effect.
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David M. Goodstein, Ph.D.
Phytozome Group Lead
Eukaryotic Data Systems
Joint Genome Institute - U.S. Dept. of Energy


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Re: stacked tracks

Suzanna Lewis-3
When you say stack, do you mean just appearing closer together (less spacing horizontally) or literally showing everything (every feature) on the same y coordinate within that track (aka "collapsed") ?

Colin's done a bit for Apollo, but hasn't yet made it a generic capability for any track. User toggle-able, but still some issue(s) recapturing the vertical space.

-S

On Wed, Feb 11, 2015 at 6:13 PM, David Goodstein <[hidden email]> wrote:
I was curious if anyone had made any progress implementing subtracks / stacked tracks, analogous to the multiz alignment and conservation tracks in the UCSC genome browser, e.g., : 


or perhaps a custom glyph that accomplishes a similar visual effect.
--
David M. Goodstein, Ph.D.
Phytozome Group Lead
Eukaryotic Data Systems
Joint Genome Institute - U.S. Dept. of Energy


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Re: stacked tracks

dmgood11
I mean the former, NOT overlaid.  Basically trying to reproduce the look of the Multiz Alignment track in the UCSC browser (see attached image).

-David


On Mon, Mar 2, 2015 at 1:17 PM, Suzanna Lewis <[hidden email]> wrote:
When you say stack, do you mean just appearing closer together (less spacing horizontally) or literally showing everything (every feature) on the same y coordinate within that track (aka "collapsed") ?

Colin's done a bit for Apollo, but hasn't yet made it a generic capability for any track. User toggle-able, but still some issue(s) recapturing the vertical space.

-S

On Wed, Feb 11, 2015 at 6:13 PM, David Goodstein <[hidden email]> wrote:
I was curious if anyone had made any progress implementing subtracks / stacked tracks, analogous to the multiz alignment and conservation tracks in the UCSC genome browser, e.g., : 


or perhaps a custom glyph that accomplishes a similar visual effect.
--
David M. Goodstein, Ph.D.
Phytozome Group Lead
Eukaryotic Data Systems
Joint Genome Institute - U.S. Dept. of Energy


------------------------------------------------------------------------------
Dive into the World of Parallel Programming. The Go Parallel Website,
sponsored by Intel and developed in partnership with Slashdot Media, is your
hub for all things parallel software development, from weekly thought
leadership blogs to news, videos, case studies, tutorials and more. Take a
look and join the conversation now. http://goparallel.sourceforge.net/
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--
David M. Goodstein, Ph.D.
Phytozome Group Lead
Eukaryotic Data Systems
Joint Genome Institute - U.S. Dept. of Energy


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by Intel and developed in partnership with Slashdot Media, is your hub for all
things parallel software development, from weekly thought leadership blogs to
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UCSC_Multiz.png (6K) Download Attachment
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Re: stacked tracks

Suzanna Lewis-3
Gotcha, and I like the idea of fitting the features more tightly together. Nothing happening there.

I'd also like to do what iPlant did and have two separate groupings within a track: one apiece for plus strand and minus strand (for stranded thingy tracks)

On Mon, Mar 2, 2015 at 1:22 PM, David Goodstein <[hidden email]> wrote:
I mean the former, NOT overlaid.  Basically trying to reproduce the look of the Multiz Alignment track in the UCSC browser (see attached image).

-David


On Mon, Mar 2, 2015 at 1:17 PM, Suzanna Lewis <[hidden email]> wrote:
When you say stack, do you mean just appearing closer together (less spacing horizontally) or literally showing everything (every feature) on the same y coordinate within that track (aka "collapsed") ?

Colin's done a bit for Apollo, but hasn't yet made it a generic capability for any track. User toggle-able, but still some issue(s) recapturing the vertical space.

-S

On Wed, Feb 11, 2015 at 6:13 PM, David Goodstein <[hidden email]> wrote:
I was curious if anyone had made any progress implementing subtracks / stacked tracks, analogous to the multiz alignment and conservation tracks in the UCSC genome browser, e.g., : 


or perhaps a custom glyph that accomplishes a similar visual effect.
--
David M. Goodstein, Ph.D.
Phytozome Group Lead
Eukaryotic Data Systems
Joint Genome Institute - U.S. Dept. of Energy


------------------------------------------------------------------------------
Dive into the World of Parallel Programming. The Go Parallel Website,
sponsored by Intel and developed in partnership with Slashdot Media, is your
hub for all things parallel software development, from weekly thought
leadership blogs to news, videos, case studies, tutorials and more. Take a
look and join the conversation now. http://goparallel.sourceforge.net/
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--
David M. Goodstein, Ph.D.
Phytozome Group Lead
Eukaryotic Data Systems
Joint Genome Institute - U.S. Dept. of Energy


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Dive into the World of Parallel Programming The Go Parallel Website, sponsored
by Intel and developed in partnership with Slashdot Media, is your hub for all
things parallel software development, from weekly thought leadership blogs to
news, videos, case studies, tutorials and more. Take a look and join the
conversation now. http://goparallel.sourceforge.net/
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