[Gmod-phendiver] Slides or bullet points about NatDiv

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[Gmod-phendiver] Slides or bullet points about NatDiv

Scott Cain
Hi all,

Next week I'm giving a lightning talk about what's new in GMOD at BOSC
and I'd like to include a few slides about the NatDiv module and what
it's intended to do.  Does anyone have something like this already
that I could use?

Thanks much,
Scott


--
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

------------------------------------------------------------------------------
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Why? It contains a definitive record of application performance, security
threats, fraudulent activity, and more. Splunk takes this data and makes
sense of it. IT sense. And common sense.
http://p.sf.net/sfu/splunk-d2d-c2
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Re: [Gmod-phendiver] Slides or bullet points about NatDiv

Sook Jung
Hi Scott,
Seth has a very nice presentation that he made for the hackathon.
https://docs.google.com/present/view?id=dd6jchc2_163gmc6c8dv
Cheers
Sook

On Wed, Jul 6, 2011 at 12:37 PM, Scott Cain <[hidden email]> wrote:

> Hi all,
>
> Next week I'm giving a lightning talk about what's new in GMOD at BOSC
> and I'd like to include a few slides about the NatDiv module and what
> it's intended to do.  Does anyone have something like this already
> that I could use?
>
> Thanks much,
> Scott
>
>
> --
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.                                   scott at scottcain dot net
> GMOD Coordinator (http://gmod.org/)                     216-392-3087
> Ontario Institute for Cancer Research
>
> ------------------------------------------------------------------------------
> All of the data generated in your IT infrastructure is seriously valuable.
> Why? It contains a definitive record of application performance, security
> threats, fraudulent activity, and more. Splunk takes this data and makes
> sense of it. IT sense. And common sense.
> http://p.sf.net/sfu/splunk-d2d-c2
> _______________________________________________
> Gmod-phendiver mailing list
> [hidden email]
> https://lists.sourceforge.net/lists/listinfo/gmod-phendiver
>



--
Sook Jung, PhD
Assistant Research Professor of Bioinformatics
Dept of Horticulture and Landscape Architecture
Washington State University
45 Johnson Hall, Pullman, WA 99164-6414
Email:[hidden email]

------------------------------------------------------------------------------
All of the data generated in your IT infrastructure is seriously valuable.
Why? It contains a definitive record of application performance, security
threats, fraudulent activity, and more. Splunk takes this data and makes
sense of it. IT sense. And common sense.
http://p.sf.net/sfu/splunk-d2d-c2
_______________________________________________
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Re: [Gmod-phendiver] Slides or bullet points about NatDiv

Scott Cain
Hi Seth and Sook,

I took Seth's hackathon slides and took the example slides and the
"simplified api" slide, which I think will do the job, that is,
assuming that the example slides are still accurate :-)  I've attached
the slides so you can take a look.

Thanks,
Scott


On Wed, Jul 6, 2011 at 12:58 PM, Sook Jung <[hidden email]> wrote:

> Hi Scott,
> Seth has a very nice presentation that he made for the hackathon.
> https://docs.google.com/present/view?id=dd6jchc2_163gmc6c8dv
> Cheers
> Sook
>
> On Wed, Jul 6, 2011 at 12:37 PM, Scott Cain <[hidden email]> wrote:
>> Hi all,
>>
>> Next week I'm giving a lightning talk about what's new in GMOD at BOSC
>> and I'd like to include a few slides about the NatDiv module and what
>> it's intended to do.  Does anyone have something like this already
>> that I could use?
>>
>> Thanks much,
>> Scott
>>
>>
>> --
>> ------------------------------------------------------------------------
>> Scott Cain, Ph. D.                                   scott at scottcain dot net
>> GMOD Coordinator (http://gmod.org/)                     216-392-3087
>> Ontario Institute for Cancer Research
>>
>> ------------------------------------------------------------------------------
>> All of the data generated in your IT infrastructure is seriously valuable.
>> Why? It contains a definitive record of application performance, security
>> threats, fraudulent activity, and more. Splunk takes this data and makes
>> sense of it. IT sense. And common sense.
>> http://p.sf.net/sfu/splunk-d2d-c2
>> _______________________________________________
>> Gmod-phendiver mailing list
>> [hidden email]
>> https://lists.sourceforge.net/lists/listinfo/gmod-phendiver
>>
>
>
>
> --
> Sook Jung, PhD
> Assistant Research Professor of Bioinformatics
> Dept of Horticulture and Landscape Architecture
> Washington State University
> 45 Johnson Hall, Pullman, WA 99164-6414
> Email:[hidden email]
>


--
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

------------------------------------------------------------------------------
All of the data generated in your IT infrastructure is seriously valuable.
Why? It contains a definitive record of application performance, security
threats, fraudulent activity, and more. Splunk takes this data and makes
sense of it. IT sense. And common sense.
http://p.sf.net/sfu/splunk-d2d-c2
_______________________________________________
Gmod-phendiver mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-phendiver

GMOD lightning talk BOSC 2011.ppt (1M) Download Attachment
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Re: [Gmod-phendiver] Slides or bullet points about NatDiv

seth redmond
looks fine to me, aside from the fact that the simplified API was  
never written - we went with a basic ORM and some js-heavy  
manipulation on the front-end instead (I'll be sending details of it  
to the list in a week or so). That does still describe the broad  
structure of the schema though.



On 6 Jul 2011, at 18:38, Scott Cain wrote:

> Hi Seth and Sook,
>
> I took Seth's hackathon slides and took the example slides and the
> "simplified api" slide, which I think will do the job, that is,
> assuming that the example slides are still accurate :-)  I've attached
> the slides so you can take a look.
>
> Thanks,
> Scott
>
>
> On Wed, Jul 6, 2011 at 12:58 PM, Sook Jung <[hidden email]> wrote:
>> Hi Scott,
>> Seth has a very nice presentation that he made for the hackathon.
>> https://docs.google.com/present/view?id=dd6jchc2_163gmc6c8dv
>> Cheers
>> Sook
>>
>> On Wed, Jul 6, 2011 at 12:37 PM, Scott Cain <[hidden email]>  
>> wrote:
>>> Hi all,
>>>
>>> Next week I'm giving a lightning talk about what's new in GMOD at  
>>> BOSC
>>> and I'd like to include a few slides about the NatDiv module and  
>>> what
>>> it's intended to do.  Does anyone have something like this already
>>> that I could use?
>>>
>>> Thanks much,
>>> Scott
>>>
>>>
>>> --
>>> ------------------------------------------------------------------------
>>> Scott Cain, Ph. D.                                   scott at  
>>> scottcain dot net
>>> GMOD Coordinator (http://gmod.org/)                     216-392-3087
>>> Ontario Institute for Cancer Research
>>>
>>> ------------------------------------------------------------------------------
>>> All of the data generated in your IT infrastructure is seriously  
>>> valuable.
>>> Why? It contains a definitive record of application performance,  
>>> security
>>> threats, fraudulent activity, and more. Splunk takes this data and  
>>> makes
>>> sense of it. IT sense. And common sense.
>>> http://p.sf.net/sfu/splunk-d2d-c2
>>> _______________________________________________
>>> Gmod-phendiver mailing list
>>> [hidden email]
>>> https://lists.sourceforge.net/lists/listinfo/gmod-phendiver
>>>
>>
>>
>>
>> --
>> Sook Jung, PhD
>> Assistant Research Professor of Bioinformatics
>> Dept of Horticulture and Landscape Architecture
>> Washington State University
>> 45 Johnson Hall, Pullman, WA 99164-6414
>> Email:[hidden email]
>>
>
>
>
> --
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.                                   scott at  
> scottcain dot net
> GMOD Coordinator (http://gmod.org/)                     216-392-3087
> Ontario Institute for Cancer Research
> <GMOD lightning talk BOSC  
> 2011
> .ppt
> >
> ------------------------------------------------------------------------------
> All of the data generated in your IT infrastructure is seriously  
> valuable.
> Why? It contains a definitive record of application performance,  
> security
> threats, fraudulent activity, and more. Splunk takes this data and  
> makes
> sense of it. IT sense. And common sense.
> http://p.sf.net/sfu/splunk-d2d-c2
> _______________________________________________
> Gmod-phendiver mailing list
> [hidden email]
> https://lists.sourceforge.net/lists/listinfo/gmod-phendiver


------------------------------------------------------------------------------
All of the data generated in your IT infrastructure is seriously valuable.
Why? It contains a definitive record of application performance, security
threats, fraudulent activity, and more. Splunk takes this data and makes
sense of it. IT sense. And common sense.
http://p.sf.net/sfu/splunk-d2d-c2
_______________________________________________
Gmod-phendiver mailing list
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Re: [Gmod-phendiver] Slides or bullet points about NatDiv

Scott Cain
Right--that was the reason I liked that slide.  I'll change the title
though, and move it to before the examples.

Thanks,
Scott


On Wed, Jul 6, 2011 at 1:51 PM, seth redmond
<[hidden email]> wrote:

> looks fine to me, aside from the fact that the simplified API was never
> written - we went with a basic ORM and some js-heavy manipulation on the
> front-end instead (I'll be sending details of it to the list in a week or
> so). That does still describe the broad structure of the schema though.
>
>
>
> On 6 Jul 2011, at 18:38, Scott Cain wrote:
>
>> Hi Seth and Sook,
>>
>> I took Seth's hackathon slides and took the example slides and the
>> "simplified api" slide, which I think will do the job, that is,
>> assuming that the example slides are still accurate :-)  I've attached
>> the slides so you can take a look.
>>
>> Thanks,
>> Scott
>>
>>
>> On Wed, Jul 6, 2011 at 12:58 PM, Sook Jung <[hidden email]> wrote:
>>>
>>> Hi Scott,
>>> Seth has a very nice presentation that he made for the hackathon.
>>> https://docs.google.com/present/view?id=dd6jchc2_163gmc6c8dv
>>> Cheers
>>> Sook
>>>
>>> On Wed, Jul 6, 2011 at 12:37 PM, Scott Cain <[hidden email]> wrote:
>>>>
>>>> Hi all,
>>>>
>>>> Next week I'm giving a lightning talk about what's new in GMOD at BOSC
>>>> and I'd like to include a few slides about the NatDiv module and what
>>>> it's intended to do.  Does anyone have something like this already
>>>> that I could use?
>>>>
>>>> Thanks much,
>>>> Scott
>>>>
>>>>
>>>> --
>>>> ------------------------------------------------------------------------
>>>> Scott Cain, Ph. D.                                   scott at scottcain
>>>> dot net
>>>> GMOD Coordinator (http://gmod.org/)                     216-392-3087
>>>> Ontario Institute for Cancer Research
>>>>
>>>>
>>>> ------------------------------------------------------------------------------
>>>> All of the data generated in your IT infrastructure is seriously
>>>> valuable.
>>>> Why? It contains a definitive record of application performance,
>>>> security
>>>> threats, fraudulent activity, and more. Splunk takes this data and makes
>>>> sense of it. IT sense. And common sense.
>>>> http://p.sf.net/sfu/splunk-d2d-c2
>>>> _______________________________________________
>>>> Gmod-phendiver mailing list
>>>> [hidden email]
>>>> https://lists.sourceforge.net/lists/listinfo/gmod-phendiver
>>>>
>>>
>>>
>>>
>>> --
>>> Sook Jung, PhD
>>> Assistant Research Professor of Bioinformatics
>>> Dept of Horticulture and Landscape Architecture
>>> Washington State University
>>> 45 Johnson Hall, Pullman, WA 99164-6414
>>> Email:[hidden email]
>>>
>>
>>
>>
>> --
>> ------------------------------------------------------------------------
>> Scott Cain, Ph. D.                                   scott at scottcain
>> dot net
>> GMOD Coordinator (http://gmod.org/)                     216-392-3087
>> Ontario Institute for Cancer Research
>> <GMOD lightning talk BOSC
>> 2011.ppt>------------------------------------------------------------------------------
>> All of the data generated in your IT infrastructure is seriously valuable.
>> Why? It contains a definitive record of application performance, security
>> threats, fraudulent activity, and more. Splunk takes this data and makes
>> sense of it. IT sense. And common sense.
>> http://p.sf.net/sfu/splunk-d2d-c2
>> _______________________________________________
>> Gmod-phendiver mailing list
>> [hidden email]
>> https://lists.sourceforge.net/lists/listinfo/gmod-phendiver
>
>



--
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

------------------------------------------------------------------------------
All of the data generated in your IT infrastructure is seriously valuable.
Why? It contains a definitive record of application performance, security
threats, fraudulent activity, and more. Splunk takes this data and makes
sense of it. IT sense. And common sense.
http://p.sf.net/sfu/splunk-d2d-c2
_______________________________________________
Gmod-phendiver mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-phendiver
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Re: [Gmod-phendiver] Slides or bullet points about NatDiv

Bob MacCallum
On Wed, Jul 6, 2011 at 6:56 PM, Scott Cain <[hidden email]> wrote:

> Right--that was the reason I liked that slide.  I'll change the title
> though, and move it to before the examples.
>
> Thanks,
> Scott
>
>
> On Wed, Jul 6, 2011 at 1:51 PM, seth redmond
> <[hidden email]> wrote:
>> looks fine to me, aside from the fact that the simplified API was never
>> written - we went with a basic ORM and some js-heavy manipulation on the
>> front-end instead (I'll be sending details of it to the list in a week or
>> so). That does still describe the broad structure of the schema though.
>>

although the model we expose through our web service is VERY simple
(project, stock and experiment only - more details when Seth announces
it)

Furthermore, we do have some of those simplified API concepts (e.g.
specialised PhenotypeAssay subclass of NdExperiment) in our
VectorBase-specific data loading API (which is a layer on top of BCS).
 But given that that is not public yet(*), it doesn't exist to all
intents and purposes ;-)

*We've no problem making it public for illustration purposes - it did
turn out to be very VectorBase-specific however.

>>
>>
>> On 6 Jul 2011, at 18:38, Scott Cain wrote:
>>
>>> Hi Seth and Sook,
>>>
>>> I took Seth's hackathon slides and took the example slides and the
>>> "simplified api" slide, which I think will do the job, that is,
>>> assuming that the example slides are still accurate :-)  I've attached
>>> the slides so you can take a look.
>>>
>>> Thanks,
>>> Scott
>>>
>>>
>>> On Wed, Jul 6, 2011 at 12:58 PM, Sook Jung <[hidden email]> wrote:
>>>>
>>>> Hi Scott,
>>>> Seth has a very nice presentation that he made for the hackathon.
>>>> https://docs.google.com/present/view?id=dd6jchc2_163gmc6c8dv
>>>> Cheers
>>>> Sook
>>>>
>>>> On Wed, Jul 6, 2011 at 12:37 PM, Scott Cain <[hidden email]> wrote:
>>>>>
>>>>> Hi all,
>>>>>
>>>>> Next week I'm giving a lightning talk about what's new in GMOD at BOSC
>>>>> and I'd like to include a few slides about the NatDiv module and what
>>>>> it's intended to do.  Does anyone have something like this already
>>>>> that I could use?
>>>>>
>>>>> Thanks much,
>>>>> Scott
>>>>>
>>>>>
>>>>> --
>>>>> ------------------------------------------------------------------------
>>>>> Scott Cain, Ph. D.                                   scott at scottcain
>>>>> dot net
>>>>> GMOD Coordinator (http://gmod.org/)                     216-392-3087
>>>>> Ontario Institute for Cancer Research
>>>>>
>>>>>
>>>>> ------------------------------------------------------------------------------
>>>>> All of the data generated in your IT infrastructure is seriously
>>>>> valuable.
>>>>> Why? It contains a definitive record of application performance,
>>>>> security
>>>>> threats, fraudulent activity, and more. Splunk takes this data and makes
>>>>> sense of it. IT sense. And common sense.
>>>>> http://p.sf.net/sfu/splunk-d2d-c2
>>>>> _______________________________________________
>>>>> Gmod-phendiver mailing list
>>>>> [hidden email]
>>>>> https://lists.sourceforge.net/lists/listinfo/gmod-phendiver
>>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> Sook Jung, PhD
>>>> Assistant Research Professor of Bioinformatics
>>>> Dept of Horticulture and Landscape Architecture
>>>> Washington State University
>>>> 45 Johnson Hall, Pullman, WA 99164-6414
>>>> Email:[hidden email]
>>>>
>>>
>>>
>>>
>>> --
>>> ------------------------------------------------------------------------
>>> Scott Cain, Ph. D.                                   scott at scottcain
>>> dot net
>>> GMOD Coordinator (http://gmod.org/)                     216-392-3087
>>> Ontario Institute for Cancer Research
>>> <GMOD lightning talk BOSC
>>> 2011.ppt>------------------------------------------------------------------------------
>>> All of the data generated in your IT infrastructure is seriously valuable.
>>> Why? It contains a definitive record of application performance, security
>>> threats, fraudulent activity, and more. Splunk takes this data and makes
>>> sense of it. IT sense. And common sense.
>>> http://p.sf.net/sfu/splunk-d2d-c2
>>> _______________________________________________
>>> Gmod-phendiver mailing list
>>> [hidden email]
>>> https://lists.sourceforge.net/lists/listinfo/gmod-phendiver
>>
>>
>
>
>
> --
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.                                   scott at scottcain dot net
> GMOD Coordinator (http://gmod.org/)                     216-392-3087
> Ontario Institute for Cancer Research
>
> ------------------------------------------------------------------------------
> All of the data generated in your IT infrastructure is seriously valuable.
> Why? It contains a definitive record of application performance, security
> threats, fraudulent activity, and more. Splunk takes this data and makes
> sense of it. IT sense. And common sense.
> http://p.sf.net/sfu/splunk-d2d-c2
> _______________________________________________
> Gmod-phendiver mailing list
> [hidden email]
> https://lists.sourceforge.net/lists/listinfo/gmod-phendiver
>

------------------------------------------------------------------------------
All of the data generated in your IT infrastructure is seriously valuable.
Why? It contains a definitive record of application performance, security
threats, fraudulent activity, and more. Splunk takes this data and makes
sense of it. IT sense. And common sense.
http://p.sf.net/sfu/splunk-d2d-c2
_______________________________________________
Gmod-phendiver mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-phendiver