Hi Michael,
An unfortunate side effect of using the development branch of Tripal is
that the code changes and sometimes we inadvertently break things.
Because we have not yet released v1.0 of Tripal the tutorial uses the
development branch. I think though that the problem you are
encountering is for a bug that has already been fixed. If you could
update your Tripal code (both the module and the theme) then I think the
problem should be resolved:
cd /var/www/sites/all/modules/tripal
git pull
cd /var/www/sites/all/themes/tripal_theme
git pull
If not let me know and we can look further at the problem for you.
Stephen
On 10/4/2012 10:31 AM, Michael Dondrup wrote:
> Hi,
>
> the tripal gff import page seems to have problems with filenames that contain capital letters, for example:
>
> I can submit an import job for /home/licebase/importdata/lsalatl1s.fasta.gff while
> /home/licebase/importdata/LSalAtl1S.fasta.gff gives an error:
>
> Cannot find the /home/licebase/drupal/LSalAtl1S.fasta.gff on the system.
> Check that the file exists or that the web server has permissions to read the file.
> (I edited the error message to really see the file name, so normally it would say "Cannot find the file ..." or something),
> but this file exists and is readable. Also, the Fasta importer didn't have the problem as it took LSalAtl1S.fasta just fine.
>
> Both files are world readable and in the same directory:
>
> -rw-rw-r-- 1 licebase licebase 0 Oct 4 16:07 /home/licebase/importdata/lsalatl1s.fasta.gff
> -rw-rw-r-- 1 licebase licebase 5735466 Oct 4 14:43 /home/licebase/importdata/LSalAtl1S.fasta.gff
>
> php is 5.3.3,
> Tripal is 1.x from the git repository.
>
>
> Best
> Michael
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