Help with Gbrowse2 datasource conf file/GBrowse2.conf file errors.

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Help with Gbrowse2 datasource conf file/GBrowse2.conf file errors.

Jayaraman, Pushkala

Hello,

I am trying to run a conf file from gbrowse1.7 onto Gbrowse2. I have made the necessary modifications such that the conf file can run on Gbrowse2.

But I seem to come across a 500 Internal server error.

 

Error logs show this:

 

[Mon May 24 12:39:43 2010] [error] [client 141.106.161.52] GBROWSE NOTICE: To enable PDF generation, please enter the directory "/user/apache" and run the commands: "sudo mkdir .

inkscape .gnome2" and "sudo chown apache .inkscape .gnome2".  To turn off this message add "generate pdf = 0" to the [GENERAL] section of your GBrowse.conf configuration file.

[Mon May 24 12:40:04 2010] [error] [client 141.106.161.52] The result of B::Deparse::coderef2text was empty - maybe you're trying to serialize an XS function?, at /usr/local/lib/

perl5/site_perl/5.8.8/Bio/Graphics/FeatureFile.pm line 443, referer: http://rgddev.mcw.edu/cgi-bin/gbrowse/yeast/

[Mon May 24 12:40:04 2010] [error] [client 141.106.161.52] Premature end of script headers: gbrowse, referer: http://rgddev.mcw.edu/cgi-bin/gbrowse/yeast/

 

 

Apart from the inkscape error what is B::Deparse::coderef2text? Please help me fix this..

 

Pushkala Jayaraman

Programmer/Analyst

Rat Genome Database

Human and Molecular Genetics Center

Medical College of Wisconsin

Email: [hidden email]

Work: 414-955-2229

www.rgd.mcw.edu

 


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