Help with from_dataset param in Galaxy XML

classic Classic list List threaded Threaded
1 message Options
Reply | Threaded
Open this post in threaded view
|

Help with from_dataset param in Galaxy XML

FredBGA

Hello

 

I try to use the from_dataset param.

I have a tabular file with two columns : sequence and ids

 

I would like to let users select some sequences, based on the ids.

 

    <param name="seq" type="select" size="120" optional="false" multiple="true" label="Choose your sequences">

        <options from_dataset="target">

            <column name="name" index="1"/>

            <column name="value" index="0"/>

        </options>

    </param>

 

 

But I would like to be able to access not only the sequences data, but also the ids.

In the <command>  tag :

name=$seq.name : it give me “seq”, the name of my parameter

value=$seq.value : it gives me “atcgatcga,tagctacgatcg,aatctactacta”, that’s fine.

 

I would like to print the id of each sequence.

Is it possible ?

 

Thank you.

 

Fred

 

---

Frederic Sapet

Bioinformatics Research Engineer

BIOGEMMA - Upstream Genomics Group

Centre de Recherche de Chappes

CS 90126

63720 CHAPPES

FRANCE

Tel : +33 (0)4 73 67 88 54

Fax : +33 (0)4 73 67 88 99

E-mail : [hidden email]

 


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/