Re: How do I make maker combine interproscan and functional_gff results
The domain info goes in the the database cross reference field according to GFF3 format. We put any functional info in the Note field as it essentially works as a description according the GFF3 best practices. You can also use iprscan2gff3 to create gff3 features corresponding to the position of domains that can be loaded into a browser. If you want domain or go info inside of the Note field of the GFF3 or in the fasta header, you would need to make your own scripts for that. Note that browsers like Browse can be configured to link out to appropriate websites for values in the Dbxref attribute.