Re: [maker-devel] How to extract GFFAlso for creating a combined GFF3 (useful when loading data into Chado) there is a script that come with MAKER
gff3_merge gff/*.gff #if you’ve already copied all GFF3 files into another directory
gff3_merge –d genome.maker.output/genome_master_datastore_index.log #if you want to let gff3_merge find the data in the MAKER output
Be aware that copying all GFF3 files into a single directory can overload the directory structure if there were more than 32,000 contigs in the input fasta file to the MAKER job as each contig will create it’s own GFF3. You can also turn off the MAKER’s datastore function by using the option –nodatastore if traversing the directory structure becomes annoying.
On 10/11/10 10:03 AM, "David Octavio Botero Rozo" <doboteror@...> wrote:
To extract all the GFF, on console type this two commands: