InterMine 0.95 error message

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InterMine 0.95 error message

Vallejos, Andrew

I am trying to release the webapp, but I keep receiving this error.

 

SEVERE: Servlet.service() for servlet jsp threw exception

java.io.FileNotFoundException: /usr/local/apache-tomcat-6.0.18/work/Catalina/localhost/ratmine/org/apache/jsp/index_jsp.java (Permission denied)

        at java.io.FileOutputStream.open(Native Method)

        at java.io.FileOutputStream.<init>(FileOutputStream.java:179)

        at java.io.FileOutputStream.<init>(FileOutputStream.java:70)

        at org.apache.jasper.compiler.Compiler.setupContextWriter(Compiler.java:259)

        at org.apache.jasper.compiler.Compiler.generateJava(Compiler.java:198)

        at org.apache.jasper.compiler.Compiler.compile(Compiler.java:315)

        at org.apache.jasper.compiler.Compiler.compile(Compiler.java:295)

        at org.apache.jasper.compiler.Compiler.compile(Compiler.java:282)

        at org.apache.jasper.JspCompilationContext.compile(JspCompilationContext.java:586)

        at org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:317)

        at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:342)

        at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:267)

        at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)

        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)

        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)

        at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)

        at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)

        at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:128)

        at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)

        at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)

        at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:286)

        at org.apache.jk.server.JkCoyoteHandler.invoke(JkCoyoteHandler.java:190)

        at org.apache.jk.common.HandlerRequest.invoke(HandlerRequest.java:283)

        at org.apache.jk.common.ChannelSocket.invoke(ChannelSocket.java:767)

        at org.apache.jk.common.ChannelSocket.processConnection(ChannelSocket.java:697)

        at org.apache.jk.common.ChannelSocket$SocketConnection.runIt(ChannelSocket.java:889)

        at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:690)

        at java.lang.Thread.run(Thread.java:619)

 

======================

Andrew Vallejos

Web Developer II

Biotechnology and Bioengineering Center

Medical College of Wisconsin

414-955-4104

[hidden email]


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Re: InterMine 0.95 error message

Richard Smith
The tomcat work directory is where runtime files are written by tomcat,
in this case it is compiling a JSP to a Java file.

If permission is denied it could be that tomcat is or was running as a
different user to the one that deployed the previous webapp.  I would
take a look at which user is running tomcat and who owns files in that
directory.

You could try restarting tomcat or manually deleting the contents of
the directory.

Cheers,
Richard.



On 01/02/2011 00:19, Vallejos, Andrew wrote:

> I am trying to release the webapp, but I keep receiving this error.
>
>
>
> SEVERE: Servlet.service() for servlet jsp threw exception
>
> java.io.FileNotFoundException:
> /usr/local/apache-tomcat-6.0.18/work/Catalina/localhost/ratmine/org/apac
> he/jsp/index_jsp.java (Permission denied)
>
>          at java.io.FileOutputStream.open(Native Method)
>
>          at java.io.FileOutputStream.<init>(FileOutputStream.java:179)
>
>          at java.io.FileOutputStream.<init>(FileOutputStream.java:70)
>
>          at
> org.apache.jasper.compiler.Compiler.setupContextWriter(Compiler.java:259
> )
>
>          at
> org.apache.jasper.compiler.Compiler.generateJava(Compiler.java:198)
>
>          at
> org.apache.jasper.compiler.Compiler.compile(Compiler.java:315)
>
>          at
> org.apache.jasper.compiler.Compiler.compile(Compiler.java:295)
>
>          at
> org.apache.jasper.compiler.Compiler.compile(Compiler.java:282)
>
>          at
> org.apache.jasper.JspCompilationContext.compile(JspCompilationContext.ja
> va:586)
>
>          at
> org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.ja
> va:317)
>
>          at
> org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:342)
>
>          at
> org.apache.jasper.servlet.JspServlet.service(JspServlet.java:267)
>
>          at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
>
>          at
> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Applica
> tionFilterChain.java:290)
>
>          at
> org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilt
> erChain.java:206)
>
>          at
> org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValv
> e.java:233)
>
>          at
> org.apache.catalina.core.StandardContextValve.invoke(StandardContextValv
> e.java:191)
>
>          at
> org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java
> :128)
>
>          at
> org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java
> :102)
>
>          at
> org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.
> java:109)
>
>          at
> org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:2
> 86)
>
>          at
> org.apache.jk.server.JkCoyoteHandler.invoke(JkCoyoteHandler.java:190)
>
>          at
> org.apache.jk.common.HandlerRequest.invoke(HandlerRequest.java:283)
>
>          at
> org.apache.jk.common.ChannelSocket.invoke(ChannelSocket.java:767)
>
>          at
> org.apache.jk.common.ChannelSocket.processConnection(ChannelSocket.java:
> 697)
>
>          at
> org.apache.jk.common.ChannelSocket$SocketConnection.runIt(ChannelSocket.
> java:889)
>
>          at
> org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool
> .java:690)
>
>          at java.lang.Thread.run(Thread.java:619)
>
>
>
> ======================
>
> Andrew Vallejos
>
> Web Developer II
>
> Biotechnology and Bioengineering Center
>
> Medical College of Wisconsin
>
> 414-955-4104
>
> [hidden email]
>
>
>
>
>
> _______________________________________________
> dev mailing list
> [hidden email]
> http://mail.intermine.org/cgi-bin/mailman/listinfo/dev


_______________________________________________
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http://mail.intermine.org/cgi-bin/mailman/listinfo/dev