Issue with maker

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Issue with maker

Pallavi Gupta

Hi Team MAKER,


I am using maker for my research for genome annotation process. But when I run maker I am getting a weird error. I tried finding a work around on the internet by scrolling through various bioinformatics forum but I was unsuccessful. I will really appreciate if you can help me in this regard. I have attached my nohup.out log. Please let me know if you need anything else.


Thanks,

Pallavi Gupta


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Re: Issue with maker

Carson Holt-2
Try updating BioPerl. This is caused by an attempt to improve certain indexing performance in BioPerl by using C code that compiles on the fly during runtime. It’s semi-unstable and really needs to be removed from BioPerl especially since a simple perl translation operator (tr///d) already fixed the need for the performance change anyways.


Alternatively edit the file in BioPerl and comment out lines 249-273 yourself with ‘#’ signs (also get the trailing bracket on line 280).

—Carson


On Oct 25, 2018, at 3:22 PM, Pallavi Gupta <[hidden email]> wrote:

Hi Team MAKER,

I am using maker for my research for genome annotation process. But when I run maker I am getting a weird error. I tried finding a work around on the internet by scrolling through various bioinformatics forum but I was unsuccessful. I will really appreciate if you can help me in this regard. I have attached my nohup.out log. Please let me know if you need anything else.

Thanks,
Pallavi Gupta
<nohup.out>_______________________________________________
maker-devel mailing list
[hidden email]
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org


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