Linking to Mine

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Linking to Mine

Paulo Nuin
Hi everyone

I have spent countless hours trying to modify this link


In order to display the regular result table from a InterMine query, following guidelines from


with no success. We are intending to link directly to a template/query result and would like to show the result table of said template/query.

Any help appreciated

Thanks

Paulo

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Re: Linking to Mine

sergio contrino-2
hi paulo!
if you the format to html at the end (or you omit it) you should get a
html table.
is this what you are looking for?
thanks!
sergio

On 2020-05-01 13:59, Paulo Nuin wrote:
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Re: Linking to Mine

HongKee Moon
In reply to this post by Paulo Nuin
Dear Paulo,

In planmine, we are using the xml queries for having the result table via link.
Could you try the below link which I made based on your link?

<a href="http://intermine.wormbase.org/tools/wormmine/loadQuery.do?skipBuilder=true&amp;query=&lt;query+name=&quot;&quot;+model=&quot;genomic&quot;+view=&quot;Strain.alleles.symbol&quot;+longDescription=&quot;&quot;+sortOrder=&quot;Strain.alleles.symbol+asc&quot;&gt;&lt;constraint+path=&quot;Strain.primaryIdentifier&quot;+op=&quot;=&quot;+value=&quot;WBStrain00000044&quot;/&gt;&lt;/query&gt;&amp;method=xml&amp;trail=|query" class="">http://intermine.wormbase.org/tools/wormmine/loadQuery.do?skipBuilder=true&query=%3Cquery+name=%22%22+model=%22genomic%22+view=%22Strain.alleles.symbol%22+longDescription=%22%22+sortOrder=%22Strain.alleles.symbol+asc%22%3E%3Cconstraint+path=%22Strain.primaryIdentifier%22+op=%22=%22+value=%22WBStrain00000044%22/%3E%3C/query%3E&method=xml&trail=%7Cquery

During my tests, it seems to be very important to have the trail attribute as well as URLEncoding properly.
Hope you  to find a solution.

Cheers,
HongKee

On 1 May 2020, at 14:59, Paulo Nuin <[hidden email]> wrote:

Hi everyone

I have spent countless hours trying to modify this link


In order to display the regular result table from a InterMine query, following guidelines from


with no success. We are intending to link directly to a template/query result and would like to show the result table of said template/query.

Any help appreciated

Thanks

Paulo
_______________________________________________
dev mailing list
[hidden email]
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--
 ____   ____   ____
/ ___| / ___| / ___| ╔======╗
Scientific   | |_    ║>_    ║
 ___) |Computing_|   ║      ║
|____/ \____||Facility=╦==╦=╝

HongKee Moon
Scientific Software Engineer, Scientific Computing Facility

Max Planck Institute of Molecular Cell Biology and Genetics
Pfotenhauerstr. 108, 01307 Dresden, Germany
Office: 008@CSBD
(: +49.351.210.1923
Fx: +49.351.210.1907


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Re: Linking to Mine

Paulo Nuin
Thanks Sergio and HongKae, appreciated, I am taking a look at it and running some tests.

Cheers

Paulo

On May 4, 2020, at 3:35 AM, HongKee Moon <[hidden email]> wrote:

Dear Paulo,

In planmine, we are using the xml queries for having the result table via link.
Could you try the below link which I made based on your link?

<a href="http://intermine.wormbase.org/tools/wormmine/loadQuery.do?skipBuilder=true&amp;query=%3Cquery+name=%22%22+model=%22genomic%22+view=%22Strain.alleles.symbol%22+longDescription=%22%22+sortOrder=%22Strain.alleles.symbol+asc%22%3E%3Cconstraint+path=%22Strain.primaryIdentifier%22+op=%22=%22+value=%22WBStrain00000044%22/%3E%3C/query%3E&amp;method=xml&amp;trail=|query" class="">http://intermine.wormbase.org/tools/wormmine/loadQuery.do?skipBuilder=true&query=%3Cquery+name=%22%22+model=%22genomic%22+view=%22Strain.alleles.symbol%22+longDescription=%22%22+sortOrder=%22Strain.alleles.symbol+asc%22%3E%3Cconstraint+path=%22Strain.primaryIdentifier%22+op=%22=%22+value=%22WBStrain00000044%22/%3E%3C/query%3E&method=xml&trail=%7Cquery

During my tests, it seems to be very important to have the trail attribute as well as URLEncoding properly.
Hope you  to find a solution.

Cheers,
HongKee

On 1 May 2020, at 14:59, Paulo Nuin <[hidden email]> wrote:

Hi everyone

I have spent countless hours trying to modify this link


In order to display the regular result table from a InterMine query, following guidelines from


with no success. We are intending to link directly to a template/query result and would like to show the result table of said template/query.

Any help appreciated

Thanks

Paulo
_______________________________________________
dev mailing list
[hidden email]
https://lists.intermine.org/mailman/listinfo/dev


--
 ____   ____   ____
/ ___| / ___| / ___| ╔======╗
Scientific   | |_    ║>_    ║
 ___) |Computing_|   ║      ║
|____/ \____||Facility=╦==╦=╝

HongKee Moon
Scientific Software Engineer, Scientific Computing Facility

Max Planck Institute of Molecular Cell Biology and Genetics
Pfotenhauerstr. 108, 01307 Dresden, Germany
Office: 008@CSBD
(: +49.351.210.1923
Fx: +49.351.210.1907



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Re: Linking to Mine

Paulo Nuin
Hi

Sergio, your suggestion returns the same thing. I am checking closely HongKee’s URL as it’s very different than what is suggested on the InterMine’s docs and on the query URL suggestion. It working fine for what we are trying to accomplish.

One question: Is it possible to obtain the same result with a template? I am having the same issues, only seeing a bare html or a TSV (but I have some clues and a starting point at this time).

Thanks again

Paulo

 

On May 4, 2020, at 7:08 AM, Paulo Nuin <[hidden email]> wrote:

Thanks Sergio and HongKae, appreciated, I am taking a look at it and running some tests.

Cheers

Paulo

On May 4, 2020, at 3:35 AM, HongKee Moon <[hidden email]> wrote:

Dear Paulo,

In planmine, we are using the xml queries for having the result table via link.
Could you try the below link which I made based on your link?

<a href="http://intermine.wormbase.org/tools/wormmine/loadQuery.do?skipBuilder=true&amp;query=%3Cquery+name=%22%22+model=%22genomic%22+view=%22Strain.alleles.symbol%22+longDescription=%22%22+sortOrder=%22Strain.alleles.symbol+asc%22%3E%3Cconstraint+path=%22Strain.primaryIdentifier%22+op=%22=%22+value=%22WBStrain00000044%22/%3E%3C/query%3E&amp;method=xml&amp;trail=|query" class="">http://intermine.wormbase.org/tools/wormmine/loadQuery.do?skipBuilder=true&query=%3Cquery+name=%22%22+model=%22genomic%22+view=%22Strain.alleles.symbol%22+longDescription=%22%22+sortOrder=%22Strain.alleles.symbol+asc%22%3E%3Cconstraint+path=%22Strain.primaryIdentifier%22+op=%22=%22+value=%22WBStrain00000044%22/%3E%3C/query%3E&method=xml&trail=%7Cquery

During my tests, it seems to be very important to have the trail attribute as well as URLEncoding properly.
Hope you  to find a solution.

Cheers,
HongKee

On 1 May 2020, at 14:59, Paulo Nuin <[hidden email]> wrote:

Hi everyone

I have spent countless hours trying to modify this link


In order to display the regular result table from a InterMine query, following guidelines from


with no success. We are intending to link directly to a template/query result and would like to show the result table of said template/query.

Any help appreciated

Thanks

Paulo
_______________________________________________
dev mailing list
[hidden email]
https://lists.intermine.org/mailman/listinfo/dev


--
 ____   ____   ____
/ ___| / ___| / ___| ╔======╗
Scientific   | |_    ║>_    ║
 ___) |Computing_|   ║      ║
|____/ \____||Facility=╦==╦=╝

HongKee Moon
Scientific Software Engineer, Scientific Computing Facility

Max Planck Institute of Molecular Cell Biology and Genetics
Pfotenhauerstr. 108, 01307 Dresden, Germany
Office: 008@CSBD
(: +49.351.210.1923
Fx: +49.351.210.1907




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Re: Linking to Mine

sergio contrino-2
hi paulo,
i am probably misunderstanding your question, i thought you wanted to
display the results in a web page. in that sense, it would work also for
template.
you could check the web services using http://iodocs.apps.intermine.org/ 
(for example 'query resutls' and 'template results')
thanks!
sergio

On 2020-05-04 15:34, Paulo Nuin wrote:

> Hi
>
> Sergio, your suggestion returns the same thing. I am checking closely
> HongKee’s URL as it’s very different than what is suggested on the
> InterMine’s docs and on the query URL suggestion. It working fine
> for what we are trying to accomplish.
>
> One question: Is it possible to obtain the same result with a
> template? I am having the same issues, only seeing a bare html or a
> TSV (but I have some clues and a starting point at this time).
>
> Thanks again
>
> Paulo
>
>> On May 4, 2020, at 7:08 AM, Paulo Nuin <[hidden email]> wrote:
>>
>> Thanks Sergio and HongKae, appreciated, I am taking a look at it and
>> running some tests.
>>
>> Cheers
>>
>> Paulo
>>
>> On May 4, 2020, at 3:35 AM, HongKee Moon <[hidden email]> wrote:
>>
>> Dear Paulo,
>>
>> In planmine, we are using the xml queries for having the result
>> table via link.
>> Could you try the below link which I made based on your link?
>>
>>
> http://intermine.wormbase.org/tools/wormmine/loadQuery.do?skipBuilder=true&query=%3Cquery+name=%22%22+model=%22genomic%22+view=%22Strain.alleles.symbol%22+longDescription=%22%22+sortOrder=%22Strain.alleles.symbol+asc%22%3E%3Cconstraint+path=%22Strain.primaryIdentifier%22+op=%22=%22+value=%22WBStrain00000044%22/%3E%3C/query%3E&method=xml&trail=%7Cquery
>> [1]
>>
>> During my tests, it seems to be very important to have the trail
>> attribute as well as URLEncoding properly.
>> Hope you  to find a solution.
>>
>> Cheers,
>> HongKee
>>
>> On 1 May 2020, at 14:59, Paulo Nuin <[hidden email]> wrote:
>>
>> Hi everyone
>>
>> I have spent countless hours trying to modify this link
>>
>>
> http://intermine.wormbase.org/tools/wormmine/service/query/results?query=%3Cquery+name%3D%22%22+model%3D%22genomic%22+view%3D%22Strain.alleles.symbol%22+longDescription%3D%22%22+sortOrder%3D%22Strain.alleles.symbol+asc%22%3E%3Cconstraint+path%3D%22Strain.primaryIdentifier%22+op%3D%22%3D%22+value%3D%22WBStrain00000044%22%2F%3E%3C%2Fquery%3E&format=tab
>> [2]
>>
>> In order to display the regular result table from a InterMine query,
>> following guidelines from
>>
>> https://intermine.readthedocs.io/en/latest/webapp/linking-in/
>>
>> with no success. We are intending to link directly to a
>> template/query result and would like to show the result table of
>> said template/query.
>>
>> Any help appreciated
>>
>> Thanks
>>
>> Paulo_______________________________________________
>> dev mailing list
>> [hidden email]
>> https://lists.intermine.org/mailman/listinfo/dev
>>
>> --
>>
>> ____   ____   ____
>> / ___| / ___| / ___| ╔======╗
>> Scientific   | |_    ║>_    ║
>> ___) |Computing_|   ║      ║
>> |____/ \____||Facility=╦==╦=╝
>>
>> HongKee Moon
>> Scientific Software Engineer, Scientific Computing Facility
>>
>> Max Planck Institute of Molecular Cell Biology and Genetics
>> Pfotenhauerstr. 108, 01307 Dresden, Germany
>> Office: 008@CSBD
>> (: +49.351.210.1923
>> Fx: +49.351.210.1907
>
>
>
> Links:
> ------
> [1]
> http://intermine.wormbase.org/tools/wormmine/loadQuery.do?skipBuilder=true&amp;query=%3Cquery+name=%22%22+model=%22genomic%22+view=%22Strain.alleles.symbol%22+longDescription=%22%22+sortOrder=%22Strain.alleles.symbol+asc%22%3E%3Cconstraint+path=%22Strain.primaryIdentifier%22+op=%22=%22+value=%22WBStrain00000044%22/%3E%3C/query%3E&amp;method=xml&amp;trail=|query
> [2]
> http://intermine.wormbase.org/tools/wormmine/service/query/results?query=%3Cquery+name=%22%22+model=%22genomic%22+view=%22Strain.alleles.symbol%22+longDescription=%22%22+sortOrder=%22Strain.alleles.symbol+asc%22%3E%3Cconstraint+path=%22Strain.primaryIdentifier%22+op=%22=%22+value=%22WBStrain00000044%22/%3E%3C/query%3E&amp;format=tab
> _______________________________________________
> dev mailing list
> [hidden email]
> https://lists.intermine.org/mailman/listinfo/dev

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