MAKER

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User support and development list for the MAKER genome annotation pipeline. MAKER is a part of the Generic Model Organism Database (GMOD) project.

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Topics (1274)
Replies Last Post Views
Find evidence for specific gene annotation (without any genome browser!) by Ricardo Nuno Ferreir...
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by Ricardo Nuno Ferreir...
Issues with locking in MPI mode by Michele Vidotto
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by Michele Vidotto
ERROR: Could not determine if RepBase is installed by Gumbi,Bonginkosi C
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by Gumbi,Bonginkosi C
processing of simple and complex repeats by Santiago Revale-2
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by Carson Holt-2
Re: Possible precedence issue with control flow operator at /apps/maker/3.01.03/lib/site_perl/5.26.2/Bio/DB/IndexedBase.pm line 805 by Carson Holt-2
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by Carson Holt-2
Re: maker-devel post from nanshangogo@gmail.com requires approval by Carson Holt-2
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by Carson Holt-2
dispersed_repeat features on rm_gff GFF3 file by Santiago Revale-2
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by Santiago Revale-2
Qusetion about the ab initio gene predictors result by nanshan yang
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by nanshan yang
Format error detected with maker2eval_gtf by Zoe Clarke-2
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by Carson Holt-2
Maker yields sequences without start and stop codon by Emmanuel Nnadi
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by Carson Holt-2
Why my gene is not annotated ? by Patrick Tran Van-2
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by Carson Holt-2
Possible precedence issue with control flow operator at /apps/maker/3.01.03/lib/site_perl/5.26.2/Bio/DB/IndexedBase.pm line 805 by Charles Gumbi
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by Charles Gumbi
Maker failed to annotated whole gene by Diana Moreno Santill...
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by Diana Moreno Santill...
maker: SQLite database locked warning by Chavez Montes, Ricar...
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by Chavez Montes, Ricar...
How do I make maker combine interproscan and functional_gff results by Emmanuel Nnadi
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by Carson Holt-2
tblastx of alt-ESTs failing on single scaffold by Daren C. Card
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by Daren C. Card
Can maker be used to improve genome assembly? by Emmanuel Nnadi
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by Carson Holt-2
Does maker support muti-processing for a single long fasta sequence using openMPI? by Xu, taosheng
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by Carson Holt-2
Issue with single contig by Zoe Clarke-2
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by Carson Holt-2
map_forward and temporary storage questions by Zoe Clarke-2
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by Carson Holt-2
MAKER failing during Augustus run by Lior Glick
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by Carson Holt-2
Re: maker-devel post from guerrer@uni-duesseldorf.de requires approval by Carson Holt-2
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by Carson Holt-2
Maker yields sequences without start and stop codon by Emmanuel Nnadi
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by Carson Holt-2
MAKER ERROR by Way
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by Way
Abinitio annotation looses many genes from EST annotation by Ricardo Nuno Ferreir...
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by Ricardo Nuno Ferreir...
Issue setting up Maker for MPI on cluster by Zoe Clarke
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by Zoe Clarke
ERROR: Failed while processing all repeats by Way
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by Way
fasta_merge problem by Maria Jose Gomez Hug...
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by Carson Holt-2
Re: maker-devel post from dianad.mosa@gmail.com requires approval by Carson Holt-2
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by Carson Holt-2
Re: maker-devel post from christopher.keeling.1@ulaval.ca requires approval by Carson Holt-2
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by Carson Holt-2
Maker Snap annotation yields match_part by Emmanuel Nnadi
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by Carson Holt-2
Re: maker-devel post from wei.xiong@wur.nl requires approval by Carson Holt-2
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by Carson Holt-2
Re: maker-devel post from jgrant@smith.edu requires approval by Carson Holt-2
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by Carson Holt-2
protein homology evidence by Way
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by Way
Maker 2.31.10: maker_functional_gff and maker_functional_fasta not parsing correctly, Can't use string ("") as a HASH ref while "strict refs" in use by Christopher Keeling
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by Christopher Keeling
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