MAKER

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User support and development list for the MAKER genome annotation pipeline. MAKER is a part of the Generic Model Organism Database (GMOD) project.

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Topics (1054)
Replies Last Post Views
Error from Pseudo gene identification scripts by Quanwei Zhang
3
by Michael Campbell
[Maker] Gene density threshold? by Jeanne Web
3
by Jeanne Web
Re: MAKER run error by Scott Cain
1
by Carson Holt-2
Difference between AED=1 and keep_preds=1 by Patrick Tran Van-2
3
by Carson Holt-2
Pseudogene identification by Quanwei Zhang
3
by Quanwei Zhang
Changing the genetic code table in MAKER by Yu-Hsuan Cheng
1
by Carson Holt-2
custom "ab initio" predictions with automatic hint-based predictions by Bob Zimmermann
3
by Carson Holt-2
About loss of Histone H2A, H2B, H4 by Quanwei Zhang
4
by Quanwei Zhang
Need your help on maker pipeline by HAI WANG
1
by Carson Holt-2
Unwarranted error: Skipping the contig because it is too short by lahcen campbell
7
by Carson Holt-2
substr outside of string in PhatHits_utils.pm by Ole Kristian Tørrese...
2
by Ole Kristian Tørrese...
99.98% of repeatmasker features on plus strand, anyone else seen this? by Matt Simenc
3
by Matt Simenc
Model training with AED=0.7 made all contigs FAILED by Lahcen Campbell-2
1
by Carson Holt-2
Model training with AED=0.7 made all contigs FAILED by lahcen campbell
0
by lahcen campbell
Error trying to submit genome to ncbi by Emmanuel Nnadi
6
by Daniel Ence-2
Advice on my pipeline by Patrick Tran Van-2
8
by Patrick Tran Van-2
Re: "ALRM" isn't numeric in exit - MAKER warning message by Carson Holt-2
0
by Carson Holt-2
How to remove contigs from GFF file by Emmanuel Nnadi
1
by Daniel Ence-2
QI codes insufficient - how to get frac exons with EST only? by Matt Simenc
4
by Marvin B Moore
Backlash running through my sequence by Emmanuel Nnadi
5
by Marvin B Moore
NNN in maker output transcript by Wen Yao
3
by Carson Holt-2
MAKER RepeatRunner error on long scaffolds only by Daren C. Card
6
by Daren C. Card
gene annotation for a better genome by Quanwei Zhang
3
by Carson Holt-2
Contamination report from NCBI by Emmanuel Nnadi
4
by Emmanuel Nnadi
fix nucleotides option on MWAS by Humann, Jodi Lynn
3
by Carson Holt-2
Fewer gene models output with a superset of EST evidence by Bob Zimmermann
2
by Carson Holt-2
Re: maker-devel Digest, Vol 113, Issue 13 by Jia-Xing Yue-2
1
by Carson Holt-2
Advanced repeat library construction - CRL step 4 assistance by ZACHARY STEWART
1
by Xabier Vázquez Campo...
choosing the right gene model by Xabier Vázquez Campo...
2
by Xabier Vázquez Campo...
jbrowse not working by Emmanuel Nnadi
3
by Carson Holt-2
Maker problem by Jan FABI
1
by Carson Holt-2
Call for presentations at GMOD workshop at PAG by Scott Cain
0
by Scott Cain
MAKER annotation submission (EMBLmyGFF3) by Jacques Dainat-4
0
by Jacques Dainat-4
Error with Maker_functional_gff by Emmanuel Nnadi
1
by Daniel Ence-2
About eAED by Quanwei Zhang
7
by Quanwei Zhang
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