MAKER

This forum is an archive for the mailing list maker-devel@yandell-lab.org (more options) Messages posted here will be sent to this mailing list.
User support and development list for the MAKER genome annotation pipeline. MAKER is a part of the Generic Model Organism Database (GMOD) project.

Subscribe to this list.

1234 ... 35
Topics (1218)
Replies Last Post Views
Problem with Maker using GeneMark by Gagné, Patrick (NRCA...
0
by Gagné, Patrick (NRCA...
Maker annotation AED scores are around 0.5 by Wei Zhao
0
by Wei Zhao
repeatmasker output gff by Homa Papoli
0
by Homa Papoli
substr outside of string at .../Carp.pm 346 by Brandon Pickett
0
by Brandon Pickett
maker_functional_gff error "Can't use string ("") as a HASH ref" by Luca Peruzza
0
by Luca Peruzza
guidance for first and subsequent annotation parameters by Devon O'Rourke
0
by Devon O'Rourke
CRL_Step2 will not produce required outputs by Emmanuel Nnadi
0
by Emmanuel Nnadi
Maker actions when using importied rm_gff file by Devon O'Rourke
2
by Devon O'Rourke
Maker 2.31.10: maker_functional_gff and maker_functional_fasta not parsing correctly, Can't use string ("") as a HASH ref while "strict refs" in use by Christopher Keeling
0
by Christopher Keeling
maker2jbrowse error: Don't know how to format iprscan tracks, skipping by joel
1
by Carson Holt-2
short scaffolds finish, long scaffolds (almost always) fail by Devon O'Rourke
7
by Carson Holt-2
maker_functional_gff error by Gongyuan Cao
0
by Gongyuan Cao
Maker Issue re-annotating by Megan Breitbach
1
by Carson Holt-2
Unassembled RNA-Seq data to Maker by Soomro, Tayab (AAFC/...
2
by Carson Holt-2
Alternative splicing in MAKER by Lior Glick
0
by Lior Glick
Alternative splicing in MAKER by Lior Glick
0
by Lior Glick
Avoiding re-indexing the same file by H.DENISE
1
by Carson Holt-2
Error: FASTA header doesn't match '>(\S+)' by Emily Abernathy
2
by Carson Holt-2
Google Summer of Code by Scott Cain
0
by Scott Cain
Illegal division by zero while polishing ESTs by Ovidiu Paun
1
by Carson Holt-2
Re: maker-devel post from david.carlson@stonybrook.edu requires approval by Carson Holt-2
0
by Carson Holt-2
Maker failing by Boyher, Adam
3
by Carson Holt-2
Maker installation-RepeatMasker (or running RepeatMasker outside maker) by Linnie Linnie
1
by Carson Holt-2
Maker with alternative Ests only by Ricardo Guerreiro
0
by Ricardo Guerreiro
Multiple UTR ? by Patrick Tran Van-2
0
by Patrick Tran Van-2
est_forward option and low or incorrect orientation transfer by Robert King (RRes-Ro...
0
by Robert King (RRes-Ro...
Apply old maker gff to new assembly by Boyher, Adam
3
by Carson Holt-2
Is Maker running without progressing? by Loïc
0
by Loïc
Overlapping Gene Models by Robert Auber
0
by Robert Auber
Fungal genome annotation by Linnie Linnie
0
by Linnie Linnie
Re: maker-devel post from david.hughes@rothamsted.ac.uk requires approval by Carson Holt-2
1
by David Hughes
MAKER v3.0.0. by David Hughes
0
by David Hughes
GMOD codefest before PAG by Scott Cain
0
by Scott Cain
How to make maker output into another directory by Emmanuel Nnadi
3
by Carson Holt-2
Maker installation fails for MacOSX by Katherine Balasingha...
1
by Carson Holt-2
1234 ... 35