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MAKER

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User support and development list for the MAKER genome annotation pipeline. MAKER is a part of the Generic Model Organism Database (GMOD) project.

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Topics (1242)
Replies Last Post Views
Maker Snap annotation yields match_part by Emmanuel Nnadi
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by Emmanuel Nnadi
protein homology evidence by Xiong, Wei
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by Xiong, Wei
Maker 2.31.10: maker_functional_gff and maker_functional_fasta not parsing correctly, Can't use string ("") as a HASH ref while "strict refs" in use by Christopher Keeling
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by Christopher Keeling
Encountering problems while using SNAP models by Sagnik Banerjee
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by Sagnik Banerjee
Assistance on MAKER annotation by D Mudiyanselage Kasu...
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by D Mudiyanselage Kasu...
Final Maker annotation extend ORF by Xiong, Wei
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by Xiong, Wei
promiscuous mapping during annotation liftover by Maxwell C Coyle
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by Carson Holt-2
Maker2 changelog and Maker3 by Xabier Vázquez-Campo...
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by Xabier Vázquez-Campo...
Intron lengths below minimum cutoff by Trojahn, Shawn Micha...
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by Trojahn, Shawn Micha...
gene:multiple_Einit and overlaps_prev_exon errors in first round of SNAP training by Carneiro,Celine M
1
by Carson Holt-2
Question about maker. Maker2 failed by 祖尧刘
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by Carson Holt-2
Unable to reproduce MAKER blastn results by Lior Glick
1
by Carson Holt-2
Missing genes in lift-over with est2genome by Lior Glick
3
by Carson Holt-2
Problems with openMPI in multiple computing nodes by Xu, taosheng
1
by Carson Holt-2
Maker 0 genes after SNAP or with proteins.gff by Ricardo Guerreiro
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by Carson Holt-2
Trouble in opening the registration page for Maker by 周鑫
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by 周鑫
maker error-ERROR: Failed while annotating transcripts by 余进(Jin Yu)
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by 余进(Jin Yu)
different number of annotated genes and transcripts by nmoreyra
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by nmoreyra
Maker v3.01 change-log + 3'UTR question by Luca Peruzza-2
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by Luca Peruzza-2
Question about maker. Maker2 failed by 祖尧刘
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by 祖尧刘
Multiple UTR ? by Patrick Tran Van-2
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by Patrick Tran Van-2
New assembly annotation by andrei.kiselev
1
by Carson Holt-2
Annotating a fragmented assembly by Lior Glick
1
by Carson Holt-2
Can install but Cannot Run MAKER by xpeng
1
by Carson Holt-2
Question about re-annotation by Thodoris Danis
1
by Carson Holt-2
Maker annotation AED scores are around 0.5 by Wei Zhao
2
by Carson Holt-2
repeatmasker output gff by Homa Papoli
1
by Carson Holt-2
Problem with Maker using GeneMark by Gagné, Patrick (NRCA...
1
by Carson Holt-2
guidance for first and subsequent annotation parameters by Devon O'Rourke
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by Carson Holt-2
final annotation issues by joel
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by joel
substr outside of string at .../Carp.pm 346 by Brandon Pickett
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by Brandon Pickett
maker_functional_gff error "Can't use string ("") as a HASH ref" by Luca Peruzza
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by Luca Peruzza
CRL_Step2 will not produce required outputs by Emmanuel Nnadi
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by Emmanuel Nnadi
Maker actions when using importied rm_gff file by Devon O'Rourke
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by Devon O'Rourke
maker2jbrowse error: Don't know how to format iprscan tracks, skipping by joel
1
by Carson Holt-2
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