GMOD › MAKER

MAKER

This forum is an archive for the mailing list maker-devel@yandell-lab.org (more options) Messages posted here will be sent to this mailing list.
User support and development list for the MAKER genome annotation pipeline. MAKER is a part of the Generic Model Organism Database (GMOD) project.

Subscribe to this list.

New Topic
People
1234 ... 32
Topics (1086)
Replies Last Post Views
how to output masked genome from MAKER by Valerie Soza
3
by Aditi Rambani
substr outside of string in PhatHits_utils.pm by Ole Kristian Tørrese...
5
by Jacques Dainat-4
Using PacBio and Illumina in MAKER by Timo Metz
3
by Carson Holt-2
Re: MAKER run error by Scott Cain
4
by Carson Holt-2
Re: MAKER Error ; BLASTX does not appear to be finished in Widget::blastx::keepers by Carson Holt
0
by Carson Holt
evidence-only gene annotation by nellerk
1
by Carson Holt-2
Re: Maker, no fasta files in output by Ansie Yssel
1
by Carson Holt-2
Re: MAKER start with masked genome by Carson Holt
0
by Carson Holt
problems running maker 2.31.9 by Norbert Grundmann
1
by Carson Holt-2
Re: SNAP bootstrap training by Carson Holt-2
1
by Carson Holt-2
SNAP bootstrap training by Timo Metz
1
by Daniel Ence-2
exon names in gff file by Qihua Liang
1
by Carson Holt-2
clarification on creating a standard build by Valerie Soza
3
by Valerie Soza
Gene loss in subsequent round of maker for fungal genome annotation by Urmi
3
by Urmi
Problems with failed contigs by seoanezonjic
3
by seoanezonjic
scaffolds missing from master_datastore_index.log and all.gff files by Valerie Soza
2
by Valerie Soza
Some transcripts have no AED? by wangzhennan
3
by Carson Holt-2
Using PASA assemblies with MAKER by Federico López
1
by Carson Holt-2
gff3 valiadation with GAG and loss of Name information, start-stop codons by Giroux, Emily (CFIA/...
1
by Carson Holt-2
failed contigs in master_datastore_index.log but no errors in screen output by Valerie Soza
3
by Carson Holt-2
Need Help with maker2jbrowse by Kevin McCormick
1
by Carson Holt-2
MPI selection by admin
5
by Carson Holt-2
questions on master_datastore_index.log file by Qihua Liang
9
by Carson Holt-2
Is it possible to extract the GFF3 file for the raw gene models predicted by est2genome and protein2genome? by Jia-Xing Yue-2
4
by Jia-Xing Yue-2
gene annotation for a better genome by Quanwei Zhang
7
by Carson Holt-2
map the transcripts back onto the genome using "est2genome=1" by Quanwei Zhang
0
by Quanwei Zhang
maker-3.01.02-beta run error by Chuanlin Yin
1
by Carson Holt-2
maker pipeline 2nd round updating augustus by Giroux, Emily (CFIA/...
1
by Carson Holt-2
Maker run problems - BLAST makeblastdb failed by Marni Tausen
2
by Carson Holt-2
Adding NR functional annotation by Patrick Tran Van-2
0
by Patrick Tran Van-2
name of gene model by Quanwei Zhang
1
by Carson Holt-2
GFF3 to .tbl by Muhammad Arslan
1
by Carson Holt-2
Names/IDs from pred_gff are included in final gff by Ole Kristian Tørrese...
2
by Ole Kristian Tørrese...
how the maker2 pipeline deal with a Ns sequence by Quanwei Zhang
1
by Carson Holt-2
Problem of maker？ by 陈军辉(Junhui Chen)
1
by Carson Holt-2
1234 ... 32
Free forum by Nabble Edit this page