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MAKER

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User support and development list for the MAKER genome annotation pipeline. MAKER is a part of the Generic Model Organism Database (GMOD) project.

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Topics (1218)
Replies Last Post Views
Problem with Maker using GeneMark by Gagné, Patrick (NRCA...
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by Gagné, Patrick (NRCA...
Maker annotation AED scores are around 0.5 by Wei Zhao
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by Wei Zhao
repeatmasker output gff by Homa Papoli
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by Homa Papoli
substr outside of string at .../Carp.pm 346 by Brandon Pickett
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by Brandon Pickett
maker_functional_gff error "Can't use string ("") as a HASH ref" by Luca Peruzza
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by Luca Peruzza
guidance for first and subsequent annotation parameters by Devon O'Rourke
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by Devon O'Rourke
CRL_Step2 will not produce required outputs by Emmanuel Nnadi
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by Emmanuel Nnadi
Maker actions when using importied rm_gff file by Devon O'Rourke
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by Devon O'Rourke
Maker 2.31.10: maker_functional_gff and maker_functional_fasta not parsing correctly, Can't use string ("") as a HASH ref while "strict refs" in use by Christopher Keeling
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by Christopher Keeling
maker2jbrowse error: Don't know how to format iprscan tracks, skipping by joel
1
by Carson Holt-2
short scaffolds finish, long scaffolds (almost always) fail by Devon O'Rourke
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by Carson Holt-2
maker_functional_gff error by Gongyuan Cao
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by Gongyuan Cao
Maker Issue re-annotating by Megan Breitbach
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by Carson Holt-2
Unassembled RNA-Seq data to Maker by Soomro, Tayab (AAFC/...
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by Carson Holt-2
Alternative splicing in MAKER by Lior Glick
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by Lior Glick
Alternative splicing in MAKER by Lior Glick
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by Lior Glick
Avoiding re-indexing the same file by H.DENISE
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by Carson Holt-2
Error: FASTA header doesn't match '>(\S+)' by Emily Abernathy
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by Carson Holt-2
Google Summer of Code by Scott Cain
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by Scott Cain
Illegal division by zero while polishing ESTs by Ovidiu Paun
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by Carson Holt-2
Re: maker-devel post from david.carlson@stonybrook.edu requires approval by Carson Holt-2
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by Carson Holt-2
Maker failing by Boyher, Adam
3
by Carson Holt-2
Maker installation-RepeatMasker (or running RepeatMasker outside maker) by Linnie Linnie
1
by Carson Holt-2
Maker with alternative Ests only by Ricardo Guerreiro
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by Ricardo Guerreiro
Multiple UTR ? by Patrick Tran Van-2
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by Patrick Tran Van-2
est_forward option and low or incorrect orientation transfer by Robert King (RRes-Ro...
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by Robert King (RRes-Ro...
Apply old maker gff to new assembly by Boyher, Adam
3
by Carson Holt-2
Is Maker running without progressing? by Loïc
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by Loïc
Overlapping Gene Models by Robert Auber
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by Robert Auber
Fungal genome annotation by Linnie Linnie
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by Linnie Linnie
Re: maker-devel post from david.hughes@rothamsted.ac.uk requires approval by Carson Holt-2
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by David Hughes
MAKER v3.0.0. by David Hughes
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by David Hughes
GMOD codefest before PAG by Scott Cain
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by Scott Cain
How to make maker output into another directory by Emmanuel Nnadi
3
by Carson Holt-2
Maker installation fails for MacOSX by Katherine Balasingha...
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by Carson Holt-2
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