MAKER

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User support and development list for the MAKER genome annotation pipeline. MAKER is a part of the Generic Model Organism Database (GMOD) project.

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Topics (1257)
Replies Last Post Views
Issue with single contig by Zoe Clarke-2
1
by Carson Holt-2
Does maker support muti-processing for a single long fasta sequence using openMPI? by Xu, taosheng
2
by Xu, taosheng
map_forward and temporary storage questions by Zoe Clarke-2
3
by Carson Holt-2
MAKER failing during Augustus run by Lior Glick
1
by Carson Holt-2
Re: maker-devel post from guerrer@uni-duesseldorf.de requires approval by Carson Holt-2
0
by Carson Holt-2
Maker yields sequences without start and stop codon by Emmanuel Nnadi
1
by Carson Holt-2
MAKER ERROR by Way
0
by Way
Abinitio annotation looses many genes from EST annotation by Ricardo Nuno Ferreir...
0
by Ricardo Nuno Ferreir...
Issue setting up Maker for MPI on cluster by Zoe Clarke
0
by Zoe Clarke
ERROR: Failed while processing all repeats by Way
0
by Way
fasta_merge problem by Maria Jose Gomez Hug...
1
by Carson Holt-2
Re: maker-devel post from dianad.mosa@gmail.com requires approval by Carson Holt-2
0
by Carson Holt-2
Re: maker-devel post from christopher.keeling.1@ulaval.ca requires approval by Carson Holt-2
0
by Carson Holt-2
Maker Snap annotation yields match_part by Emmanuel Nnadi
4
by Carson Holt-2
Re: maker-devel post from wei.xiong@wur.nl requires approval by Carson Holt-2
0
by Carson Holt-2
Re: maker-devel post from jgrant@smith.edu requires approval by Carson Holt-2
0
by Carson Holt-2
protein homology evidence by Way
0
by Way
Maker 2.31.10: maker_functional_gff and maker_functional_fasta not parsing correctly, Can't use string ("") as a HASH ref while "strict refs" in use by Christopher Keeling
2
by Christopher Keeling
Encountering problems while using SNAP models by Sagnik Banerjee
1
by Sagnik Banerjee
Assistance on MAKER annotation by D Mudiyanselage Kasu...
0
by D Mudiyanselage Kasu...
Final Maker annotation extend ORF by Way
0
by Way
promiscuous mapping during annotation liftover by Maxwell C Coyle
1
by Carson Holt-2
Maker2 changelog and Maker3 by Xabier Vázquez-Campo...
0
by Xabier Vázquez-Campo...
Intron lengths below minimum cutoff by Trojahn, Shawn Micha...
0
by Trojahn, Shawn Micha...
gene:multiple_Einit and overlaps_prev_exon errors in first round of SNAP training by Carneiro,Celine M
1
by Carson Holt-2
Question about maker. Maker2 failed by 祖尧刘
1
by Carson Holt-2
Unable to reproduce MAKER blastn results by Lior Glick
1
by Carson Holt-2
Missing genes in lift-over with est2genome by Lior Glick
3
by Carson Holt-2
Problems with openMPI in multiple computing nodes by Xu, taosheng
1
by Carson Holt-2
Maker 0 genes after SNAP or with proteins.gff by Ricardo Nuno Ferreir...
2
by Carson Holt-2
Trouble in opening the registration page for Maker by 周鑫
0
by 周鑫
maker error-ERROR: Failed while annotating transcripts by 余进(Jin Yu)
0
by 余进(Jin Yu)
different number of annotated genes and transcripts by nmoreyra
0
by nmoreyra
Maker v3.01 change-log + 3'UTR question by Luca Peruzza-2
2
by Luca Peruzza-2
Question about maker. Maker2 failed by 祖尧刘
0
by 祖尧刘
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