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MAKER

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User support and development list for the MAKER genome annotation pipeline. MAKER is a part of the Generic Model Organism Database (GMOD) project.

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Topics (1207)
Replies Last Post Views
Unassembled RNA-Seq data to Maker by Soomro, Tayab (AAFC/...
1
by Jason Stajich-4
short scaffolds finish, long scaffolds (almost always) fail by Devon O'Rourke
0
by Devon O'Rourke
Maker Issue re-annotating by Megan Breitbach
0
by Megan Breitbach
Alternative splicing in MAKER by Lior Glick
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by Lior Glick
Alternative splicing in MAKER by Lior Glick
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by Lior Glick
Avoiding re-indexing the same file by H.DENISE
1
by Carson Holt-2
Error: FASTA header doesn't match '>(\S+)' by Emily Abernathy
2
by Carson Holt-2
Google Summer of Code by Scott Cain
0
by Scott Cain
Illegal division by zero while polishing ESTs by Ovidiu Paun
1
by Carson Holt-2
Re: maker-devel post from david.carlson@stonybrook.edu requires approval by Carson Holt-2
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by Carson Holt-2
Maker failing by Boyher, Adam
3
by Carson Holt-2
Maker installation-RepeatMasker (or running RepeatMasker outside maker) by Linnie Linnie
1
by Carson Holt-2
Maker with alternative Ests only by Ricardo Guerreiro
0
by Ricardo Guerreiro
Multiple UTR ? by Patrick Tran Van-2
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by Patrick Tran Van-2
est_forward option and low or incorrect orientation transfer by Robert King (RRes-Ro...
0
by Robert King (RRes-Ro...
Apply old maker gff to new assembly by Boyher, Adam
3
by Carson Holt-2
Is Maker running without progressing? by Loïc
0
by Loïc
Overlapping Gene Models by Robert Auber
0
by Robert Auber
Fungal genome annotation by Linnie Linnie
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by Linnie Linnie
Re: maker-devel post from david.hughes@rothamsted.ac.uk requires approval by Carson Holt-2
1
by David Hughes
MAKER v3.0.0. by David Hughes
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by David Hughes
GMOD codefest before PAG by Scott Cain
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by Scott Cain
How to make maker output into another directory by Emmanuel Nnadi
3
by Carson Holt-2
Maker installation fails for MacOSX by Katherine Balasingha...
1
by Carson Holt-2
/perl/lib/auto/Acme/Damn/Damn.so: undefined symbol: Perl_xs_apiversion_bootcheck by Emmanuel Nnadi
1
by Carson Holt-2
Maker decision of genes when having a long transcript over several proteins by Qihua Liang
1
by Carson Holt-2
Maker decision of genes when having a long transcript over several proteins by Qihua Liang
0
by Qihua Liang
Trouble with EVM and evidence from external GFF3 by Cédric Cabau
0
by Cédric Cabau
which files are expected after fasta_merge? by Brandon Pickett
1
by Carson Holt-2
Haplotype specific annotations by Boyher, Adam
1
by Carson Holt-2
GeneWise in MAKER? by Jacques Dainat-4
0
by Jacques Dainat-4
maker_gff parameter - problem when gff contains fasta sequences by Jacques Dainat-4
3
by Jacques Dainat-4
maker with mpi support on example still not done after two days by Taslim, Cenny
3
by Carson Holt-2
maker predicting only part of a gene by Das, Debojyoti
1
by Carson Holt-2
Running maker with suboptimal evidence by Martin, John
1
by Carson Holt-2
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