MAKER

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User support and development list for the MAKER genome annotation pipeline. MAKER is a part of the Generic Model Organism Database (GMOD) project.

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Topics (1252)
Replies Last Post Views
Running MAKER with MPI support and SLURM scheduler by Siller, Karsten H (k...
2
by Siller, Karsten H (k...
Why doesn't MAKER use all the cores when I run it on an instance? by Paul Sheridan
1
by Carson Holt-2
MAKER v3 Fgenesh ERROR by kapeel
3
by Carson Holt-2
Profiling MAKER runs by Lior Glick
0
by Lior Glick
Does Conda Maker actually work? by SARIGOEL, FATIH
3
by Anthony Bretaudeau-2
Re-annotation, fewer gene predictions by morgan sobol
5
by morgan sobol
Unknown (X) amino acids in predicted proteins by Lior Glick
1
by Carson Holt-2
MAKER not calling RepeatMasker exe indicated in maker_exe.ctl by Lior Glick-2
1
by Carson Holt-2
MAKER not calling RepeatMasker exe indicated in maker_exe.ctl by Lior Glick
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by Lior Glick
MAKER on AWS by DECKER, KEITH F [AG/...
3
by Carson Holt-2
Maker crash with big protein evidence ? by Patrick Tran Van-2
3
by Carson Holt-2
BioPerl and MAKER by Fields, Christopher ...
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by Fields, Christopher ...
Fwd: [GSoC 2019] [Open Genome Informatics] Google Summer of Code 2019 Participation by Scott Cain
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by Scott Cain
Maker can't find snap by Seth_m55
2
by Carson Holt-2
tRNAscan-SE file already exists by Seth_m55
1
by Carson Holt-2
About split genes in MAKER annotation by Prashant Narendra SH...
5
by Carson Holt-2
Re Best annotation set failure (auto_annotator.pm line 1774) by Jacques Dainat-4
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by Jacques Dainat-4
RNA-seq gff file cause MAKER running arrest by ytshen
1
by Carson Holt-2
fasta_merge and gff3_merge commands not working by Nikolay Alabi
1
by Carson Holt-2
Problem compiling MAKER with Intel MPI by Lior Glick
1
by Carson Holt-2
Issue with maker by Pallavi Gupta
1
by Carson Holt-2
MAKER not running properly after installation, help needed by Nikolay Alabi
1
by Carson Holt-2
CIGAR string explanation by Jacques Dainat-4
3
by Elyssa Garza
EVM control file and est2genome by Linnie Linnie
1
by Carson Holt-2
Segfault with OpenMPI by Anthony Bretaudeau-2
5
by Carson Holt-2
maker3 by Linnie Linnie
1
by Carson Holt-2
Speed up maker annotation on long scaffolds by Yiyuan Li
1
by Carson Holt-2
Re: maker problem by Carson Hinton Holt
7
by Carson Holt-2
maker-level google group by Linnie Linnie
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by Linnie Linnie
Help debugging a MAKER result by Lior Glick
7
by Lior Glick
NCBI now accepts GFF by Daniel Ence-2
0
by Daniel Ence-2
Plant and Animal Genome Conference 2019 by Carson Hinton Holt
0
by Carson Hinton Holt
Re-annotation of a previous annotation with "est2genome=1" by dupim
1
by Carson Holt-2
Maker annotation small DNA fragments by Philippine De Boisse...
1
by Carson Holt-2
MAKER chooser algorithm by Timo Metz
1
by Carson Holt-2
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