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User support and development list for the MAKER genome annotation pipeline. MAKER is a part of the Generic Model Organism Database (GMOD) project.

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Topics (954)
Replies Last Post Views
default gene model by quality_filter.pl is the same with those by setting keep_preds=0? by Quanwei Zhang
1
by Carson Holt-2
Which version of InterProScan should I use by Quanwei Zhang
1
by Michael Campbell
Error: Unknown argument: "max_hsps_per_subject" by Quanwei Zhang
2
by Quanwei Zhang
Evidences in fasta format but be alignment in every run? by Quanwei Zhang
3
by Michael Campbell
training of gene finders using whole assembly or longest contigs? by Quanwei Zhang
1
by Carson Holt-2
Updating Reference Gene Models - Legacy - Strategy by Alessandro Rossoni-3
1
by Carson Holt-2
Masking is causing problems with exon/CDS boundary predictions by Salim Bougouffa
1
by Carson Holt-2
MAKER and OpenMPI by Seth_m55
3
by Carson Holt-2
make use of other gene finders in maker by Quanwei Zhang
1
by Daniel Ence
Problem with fgenesh protein IDs by Alisa Postma
1
by Carson Holt-2
Can't Install Proc::Signal by Marcus Naymik
3
by Carson Holt-2
augustus failed in maker2 by Quanwei Zhang
0
by Quanwei Zhang
collecting protein sequences as evidences by Quanwei Zhang
4
by Quanwei Zhang
Transcript assembly of RNA-seq data from different tissues and individuals by Quanwei Zhang
5
by Fields, Christopher ...
Re: GFF3 file format by Scott Cain
3
by Fields, Christopher ...
transcript assembly of RNA-seq data by Quanwei Zhang
3
by Carson Holt-2
canonical protein sequences or isoform? by Quanwei Zhang
1
by Michael Campbell
Maker error: Invalid nucleotide by Daren C. Card
1
by Carson Holt-2
Authorization failed. by Maya Britstein
1
by Barry Moore-2
Maker crash for long chrm. by Vipul Patel
2
by Carson Holt-2
gff file: possible sources by Qihua Liang
1
by Daniel Ence
MAKER/repeatmasker/TRF parsing of long file names by Liudmila Sergeevna M...
1
by Carson Holt-2
/tmp full by Benjamin Rubin
2
by Benjamin Rubin
Unable to train SNAP by Oleg Lovky
2
by Carson Holt-2
Repeat library construction - CRL scripts by Rob Syme
3
by Rob Syme
map_fasta_ids : No mapping available... by chebbi mohamed amine...
3
by Carson Holt-2
Error running MAKER by John Cornelius
5
by Carson Holt-2
error: training genemodel with SNAP and GeneMark & run time to generate AUGUTUS species file by Parul Kudtarkar
3
by Parul Kudtarkar
Re: About split genes problem in Maker annotations by Carson Holt-2
0
by Carson Holt-2
Re: Predictions without evidence by Carson Holt-2
0
by Carson Holt-2
strand of single exon EST from fasta by Jacques Dainat-3
1
by Carson Holt-2
Maker-P by Pierre-Francois Bert
1
by Carson Holt-2
ProtExcluder1.2 Error by chebbi mohamed amine...
5
by jiangn
Last Call for GMOD talks at PAG by Scott Cain
0
by Scott Cain
est_gff input does not provide any gene model by Jacques Dainat-3
3
by Carson Holt-2
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