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MAKER

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User support and development list for the MAKER genome annotation pipeline. MAKER is a part of the Generic Model Organism Database (GMOD) project.

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Topics (1015)
Replies Last Post Views
RepeatMasker masking olfactory receptors by Annabel Beichman
1
by 4urelie K
Re: non-M gene models by Carson Holt
0
by Carson Holt
Maker-Error when started with IMPI by Rainer Rutka
13
by Carson Holt-2
split genes by Quanwei Zhang
4
by Fields, Christopher ...
evidence of transcript assembly by Quanwei Zhang
1
by Carson Holt-2
GFF no longer valid after renaming genes by Glenna Kramer
2
by Carson Holt-2
putative gene function by mapping to UniProt/Swiss-prot set by Quanwei Zhang
1
by Michael Campbell
Using GeneMark-ET with RNAseq intron hints by Ray Cui-2
8
by Carson Holt-2
ThrowNullPointerException() by Marcus Naymik
5
by Carson Holt-2
For help about masking repeats before annotation by dcg@cau.edu.cn
3
by jiangn
How to get Pseudogene by dcg@cau.edu.cn
0
by dcg@cau.edu.cn
Est2Genome Problems by Jason Gallant
5
by Carson Holt-2
Differences in non_overlapping protein file between runs by YannDussert
3
by Carson Holt-2
Maker ERROR by José Mª G. Perez-Sil...
1
by Carson Holt-2
ERROR: Chunk failed by José Mª G. Perez-Sil...
0
by José Mª G. Perez-Sil...
MAKER version 3.1 and integration with resequencing by Ole Kristian Tørrese...
5
by Ole Kristian Tørrese...
PARALLELIZED DE NOVO GENOME ANNOTATION WITHOUT MPI by Quanwei Zhang
5
by Carson Holt-2
Ab initio gene prediction; 0 genes when creating HMM via SNAP by lucys-world
3
by lucys-world
How to merge the annotation results into chromosomes? by dcg@cau.edu.cn
1
by Ence,daniel
how to deal with Contigs to run maker? by dcg@cau.edu.cn
2
by Carson Holt-2
SOBA statistics of Maker annotation by Qihua Liang
6
by Carson Holt-2
genes longer than contig in maker by lucile.soler@bils.se
1
by Carson Holt-2
Failed while polishing ESTs by Seth_m55
6
by Carson Holt-2
Maker-Error when started with OpenMPI by Rainer Rutka
5
by Carson Holt-2
MAKER can't find forks in @INC, but it is there by Seth_m55
6
by Fields, Christopher ...
failed to assign putative gene function by Quanwei Zhang
2
by Carson Holt-2
default gene model by quality_filter.pl is the same with those by setting keep_preds=0? by Quanwei Zhang
1
by Carson Holt-2
Which version of InterProScan should I use by Quanwei Zhang
1
by Michael Campbell
Error: Unknown argument: "max_hsps_per_subject" by Quanwei Zhang
2
by Quanwei Zhang
Evidences in fasta format but be alignment in every run? by Quanwei Zhang
3
by Michael Campbell
training of gene finders using whole assembly or longest contigs? by Quanwei Zhang
1
by Carson Holt-2
Updating Reference Gene Models - Legacy - Strategy by Alessandro Rossoni-3
1
by Carson Holt-2
Masking is causing problems with exon/CDS boundary predictions by Salim Bougouffa
1
by Carson Holt-2
MAKER and OpenMPI by Seth_m55
3
by Carson Holt-2
make use of other gene finders in maker by Quanwei Zhang
1
by Daniel Ence
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