MAKER

This forum is an archive for the mailing list maker-devel@yandell-lab.org (more options) Messages posted here will be sent to this mailing list.
User support and development list for the MAKER genome annotation pipeline. MAKER is a part of the Generic Model Organism Database (GMOD) project.

Subscribe to this list.

123456 ... 33
Topics (1130)
Replies Last Post Views
maker-3.01.02-beta run error by Chuanlin Yin
1
by Carson Holt-2
maker pipeline 2nd round updating augustus by Giroux, Emily (CFIA/...
1
by Carson Holt-2
Maker run problems - BLAST makeblastdb failed by Marni Tausen
2
by Carson Holt-2
Adding NR functional annotation by Patrick Tran Van-2
0
by Patrick Tran Van-2
name of gene model by Quanwei Zhang
1
by Carson Holt-2
GFF3 to .tbl by Muhammad Arslan
1
by Carson Holt-2
Names/IDs from pred_gff are included in final gff by Ole Kristian Tørrese...
2
by Ole Kristian Tørrese...
how the maker2 pipeline deal with a Ns sequence by Quanwei Zhang
1
by Carson Holt-2
Problem of maker? by 陈军辉(Junhui Chen)
1
by Carson Holt-2
Error from Pseudo gene identification scripts by Quanwei Zhang
8
by Quanwei Zhang
[Maker] Gene density threshold? by Jeanne Web
3
by Jeanne Web
Difference between AED=1 and keep_preds=1 by Patrick Tran Van-2
3
by Carson Holt-2
Pseudogene identification by Quanwei Zhang
3
by Quanwei Zhang
Changing the genetic code table in MAKER by Yu-Hsuan Cheng
1
by Carson Holt-2
custom "ab initio" predictions with automatic hint-based predictions by Bob Zimmermann
3
by Carson Holt-2
About loss of Histone H2A, H2B, H4 by Quanwei Zhang
4
by Quanwei Zhang
Need your help on maker pipeline by HAI WANG
1
by Carson Holt-2
Unwarranted error: Skipping the contig because it is too short by lahcen campbell
7
by Carson Holt-2
99.98% of repeatmasker features on plus strand, anyone else seen this? by Matt Simenc
3
by Matt Simenc
Model training with AED=0.7 made all contigs FAILED by Lahcen Campbell-2
1
by Carson Holt-2
Model training with AED=0.7 made all contigs FAILED by lahcen campbell
0
by lahcen campbell
Error trying to submit genome to ncbi by Emmanuel Nnadi
6
by Daniel Ence-2
Advice on my pipeline by Patrick Tran Van-2
8
by Patrick Tran Van-2
Re: "ALRM" isn't numeric in exit - MAKER warning message by Carson Holt-2
0
by Carson Holt-2
How to remove contigs from GFF file by Emmanuel Nnadi
1
by Daniel Ence-2
QI codes insufficient - how to get frac exons with EST only? by Matt Simenc
4
by Marvin B Moore
Backlash running through my sequence by Emmanuel Nnadi
5
by Marvin B Moore
NNN in maker output transcript by Wen Yao
3
by Carson Holt-2
MAKER RepeatRunner error on long scaffolds only by Daren C. Card
6
by Daren C. Card
Contamination report from NCBI by Emmanuel Nnadi
4
by Emmanuel Nnadi
fix nucleotides option on MWAS by Humann, Jodi Lynn
3
by Carson Holt-2
Fewer gene models output with a superset of EST evidence by Bob Zimmermann
2
by Carson Holt-2
Re: maker-devel Digest, Vol 113, Issue 13 by Jia-Xing Yue-2
1
by Carson Holt-2
Advanced repeat library construction - CRL step 4 assistance by ZACHARY STEWART
1
by Xabier Vázquez-Campo...
choosing the right gene model by Xabier Vázquez-Campo...
2
by Xabier Vázquez-Campo...
123456 ... 33