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MAKER

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User support and development list for the MAKER genome annotation pipeline. MAKER is a part of the Generic Model Organism Database (GMOD) project.

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Topics (1171)
Replies Last Post Views
Genemark XXX.mod files by Jennifer Anderson
1
by Jason Stajich-4
Best annotation set failure (auto_annotator.pm line 1774) by Greer Dolby
0
by Greer Dolby
Filtering gene models based on eAED scores by Federico López
3
by Carson Holt-2
Transcript & protein fasta sequence id/name collisions by Stein, Joshua
2
by Stein, Joshua
Merge warning = 1 by Jennifer Anderson
1
by Carson Holt-2
largest genome annotated? by Andor J Kiss
2
by Carson Holt-2
how to input a masked assembly for annotation into Maker by Valerie Soza
1
by Carson Holt-2
Building MAKER with specific perl version by Ksenia Lavrichenko
1
by Carson Holt-2
large UTR overhang by Timo Metz
1
by Carson Holt-2
databases supported with ipr_update_gff script by Valerie Soza
1
by Carson Holt-2
MAKER beta not inferring gene models from protein evidence by Timo Metz
0
by Timo Metz
MAKER v3 ERROR: Failed while processing all repeats by kapeel
2
by kapeel
keep_preds=0 but some gene models have anyway an AED equal to 1. by Jacques Dainat-4
3
by Carson Holt-2
MAKER v3 ERROR: Failed while processing all repeats by kapeel
0
by kapeel
Error in maker perl module by Jiapeng Chen
1
by Carson Holt-2
how to output masked genome from MAKER by Valerie Soza
4
by Carson Holt-2
substr outside of string in PhatHits_utils.pm by Ole Kristian Tørrese...
5
by Jacques Dainat-4
Using PacBio and Illumina in MAKER by Timo Metz
3
by Carson Holt-2
Re: MAKER run error by Scott Cain
4
by Carson Holt-2
Re: MAKER Error ; BLASTX does not appear to be finished in Widget::blastx::keepers by Carson Hinton Holt
0
by Carson Hinton Holt
evidence-only gene annotation by nellerk
1
by Carson Holt-2
Re: Maker, no fasta files in output by Ansie Yssel
1
by Carson Holt-2
Re: MAKER start with masked genome by Carson Hinton Holt
0
by Carson Hinton Holt
problems running maker 2.31.9 by Norbert Grundmann
1
by Carson Holt-2
Re: SNAP bootstrap training by Carson Holt-2
1
by Carson Holt-2
SNAP bootstrap training by Timo Metz
1
by Daniel Ence-2
exon names in gff file by Qihua Liang
1
by Carson Holt-2
clarification on creating a standard build by Valerie Soza
3
by Valerie Soza
Gene loss in subsequent round of maker for fungal genome annotation by Urmi
3
by Urmi
Problems with failed contigs by seoanezonjic
3
by seoanezonjic
scaffolds missing from master_datastore_index.log and all.gff files by Valerie Soza
2
by Valerie Soza
Some transcripts have no AED? by wangzhennan
3
by Carson Holt-2
Using PASA assemblies with MAKER by Federico López
1
by Carson Holt-2
gff3 valiadation with GAG and loss of Name information, start-stop codons by Giroux, Emily (CFIA/...
1
by Carson Holt-2
failed contigs in master_datastore_index.log but no errors in screen output by Valerie Soza
3
by Carson Holt-2
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